Skip to content

@bihealth Berlin Institute of Health

Change the repository type filter

All

    Repositories list

    175 repositories

    • sodar-server

      Public
      SODAR: System for Omics Data Access and Retrieval
      Python
      •
      MIT License
      •3•16•345•0•Updated Feb 17, 2025Feb 17, 2025

    • cubi-tk

      Public
      CUBI Tooling for SODAR, VarFish et al.
      Python
      •
      MIT License
      •5•5•41•5•Updated Feb 17, 2025Feb 17, 2025

    • sodar-core

      Public
      SODAR Core: A Django-based framework for building scientific data management web apps
      Python
      •
      MIT License
      •1•9•256•0•Updated Feb 17, 2025Feb 17, 2025

    • ood-bih-jupyter

      Public
      Open OnDemand App: Jupyter
      HTML
      •
      MIT License
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • reev

      Public
      REEV: Explanation and Evaluation of Variants
      TypeScript
      •
      MIT License
      •4•9•39•7•Updated Feb 17, 2025Feb 17, 2025

    • seaPiper

      Public
      Workflow output explorer for sea-snap
      R
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Feb 17, 2025Feb 17, 2025

    • singularity-jupyter

      Public
      Singularity images for Jupyter (based on minconda3 Docker image)
      0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • sodar-cli

      Public
      SODAR REST API client (CLI + Python package)
      Python
      •
      MIT License
      •1•1•8•4•Updated Feb 14, 2025Feb 14, 2025

    • bih-cluster

      Public
      BIH Cluster Wiki
      Awk
      •
      Other
      •36•16•6•0•Updated Feb 14, 2025Feb 14, 2025

    • swibrid

      Public
      Python
      •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • swibrid_paper

      Public
      Code and scripts for SWIBRID publication
      Jupyter Notebook
      •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • snappy-pipeline

      Public
      SNAPPY Nucleic Acid Processing in Python
      Python
      •
      MIT License
      •4•10•114•21•Updated Feb 13, 2025Feb 13, 2025

    • nf-core-configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •287•0•0•1•Updated Feb 12, 2025Feb 12, 2025

    • dotty

      Public
      cdot-based transcript projections
      Python
      •
      MIT License
      •0•0•2•0•Updated Feb 10, 2025Feb 10, 2025

    • ngs-chew

      Public
      Tasty, tasty, NGS!
      Python
      •1•3•14•3•Updated Feb 10, 2025Feb 10, 2025

    • isaeditor

      Public
      Tools for editing ISA-Tabs in R
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • LimsaR

      Public
      R client for SODAR
      R
      •
      Other
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • ood-bih-rstudio-server

      Public
      Open OnDemand App: RStudio Server
      Shell
      •
      MIT License
      •1•1•1•0•Updated Feb 6, 2025Feb 6, 2025

    • irods-docker

      Public
      iRODS Docker image for use with SODAR
      Jinja
      •
      MIT License
      •2•1•11•0•Updated Feb 3, 2025Feb 3, 2025

    • altamisa

      Public
      AltamISA: a Python API for ISA-Tab files
      bioinformaticsisa-tabisa
      Python
      •
      MIT License
      •2•5•23•7•Updated Jan 27, 2025Jan 27, 2025

    • kayobe

      Public
      Deployment of containerised OpenStack to bare metal using kolla and bifrost. Mirror of code maintained at opendev.org.
      Python
      •
      Apache License 2.0
      •34•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • kolla-ansible

      Public
      Ansible deployment of the Kolla containers. Mirror of code maintained at opendev.org.
      Jinja
      •
      Apache License 2.0
      •638•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • seasnap-pipeline

      Public
      SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
      Python
      •2•1•23•2•Updated Jan 22, 2025Jan 22, 2025

    • StemCNV-check

      Public
      R
      •
      MIT License
      •0•0•4•0•Updated Jan 16, 2025Jan 16, 2025

    • hpc-access

      Public
      Web interface for managing access and resource requests for the BIH cluster
      Python
      •
      MIT License
      •0•0•42•5•Updated Jan 15, 2025Jan 15, 2025

    • Rseasnap

      Public
      Uncomplicated access to sea-snap objects from R
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •3•3•13•1•Updated Dec 19, 2024Dec 19, 2024

    • kiosc-server

      Public
      dockerdjango
      Python
      •
      MIT License
      •1•1•29•4•Updated Dec 9, 2024Dec 9, 2024

    • ansible-collection-kolla

      Public
      Ansible collection for OpenStack Kolla. Mirror of code maintained at opendev.org.
      Python
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • reev-frontend-lib

      Public
      Re-useable components from REEV
      TypeScript
      •1•0•1•8•Updated Nov 22, 2024Nov 22, 2024