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    19 repositories

    • blobology

      Public
      Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)
      Perl
      •
      MIT License
      •17•46•5•2•Updated May 27, 2022May 27, 2022

    • ncrnaannot-docker

      Public
      1•0•0•0•Updated Oct 9, 2017Oct 9, 2017

    • shortstack-docker

      Public
      Docker container for running ShortStack for small RNAs
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 5, 2017Jul 5, 2017

    • ngenomes-ensembl

      Public
      HTML
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 19, 2017Jun 19, 2017

    • tardibase-ensembl

      Public
      Perl
      •
      MIT License
      •0•0•0•0•Updated Jun 2, 2017Jun 2, 2017

    • braker-docker

      Public
      Docker container for running braker gene finder
      MIT License
      •1•6•0•0•Updated May 24, 2017May 24, 2017

    • bridger-docker

      Public
      Docker container for running Bridger assembler for transcriptomes
      MIT License
      •0•0•0•0•Updated May 24, 2017May 24, 2017

    • prokka-docker

      Public
      Apache License 2.0
      •0•0•0•0•Updated Apr 12, 2017Apr 12, 2017

    • interproscan-docker

      Public
      Docker container to run EBI Interproscan
      MIT License
      •5•2•0•0•Updated Mar 28, 2017Mar 28, 2017

    • ncbi-blast-docker

      Public
      Docker container to run NCBI blast using GNU parallel
      Perl
      •
      MIT License
      •1•2•0•0•Updated Mar 7, 2017Mar 7, 2017

    • ngenomes-sequenceserver

      Public
      Ruby
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Oct 6, 2016Oct 6, 2016

    • metabarcoding_pipeline

      Public
      A simple metabarcoding analysis pipeline using usearch.
      Perl
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Sep 19, 2016Sep 19, 2016

    • ngenomes-search

      Public
      an Ensembl plugin to provide ngenomes autocomplete and search
      Perl
      •
      Apache License 2.0
      •2•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • ngenomes-blast-linkout

      Public
      provides buttons to link out to SequenceServer from gene/transcript pages
      Perl
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 24, 2016Aug 24, 2016

    • documentation

      Public
      MIT License
      •1•1•1•0•Updated May 12, 2016May 12, 2016

    • sandbox

      Public
      testing gitty stuff. nothing else to see here
      0•0•0•0•Updated Mar 22, 2016Mar 22, 2016

    • utilities

      Public
      general purpose bioinformatics scripts and utilities
      Perl
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2016Mar 9, 2016

    • scripts

      Public
      Blaxter lab scripts
      Perl
      •1•7•0•0•Updated Jun 10, 2014Jun 10, 2014

    • nembase4

      Public
      NEMBASE is a resource for nematode transcriptome analysis, and a research tool for nematode biology, drug discovery and vaccine design.
      PHP
      •0•1•0•0•Updated Aug 15, 2013Aug 15, 2013