Repositories list

• scimaps

  Public
  SciMaps website

  TypeScript

  •0•2•10•0•Updated Mar 1, 2025Mar 1, 2025

• upptime

  Public
  CNS Services Uptime Monitor

  Markdown

  •

  MIT License

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• onto-llm-mapping

  Public
  [WIP] ontology mapping using LLMs and RAG

  Shell

  •

  MIT License

  •0•7•1•0•Updated Feb 28, 2025Feb 28, 2025

• hra-cell-type-populations-supporting-information

  Public
  Supporting information page for the HRApop paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •1•0•9•0•Updated Feb 28, 2025Feb 28, 2025

• hra-cns-leskovec-echange

  Public
  A repository for code and data exchange between CNS and the Leskovec team

  Jupyter Notebook

  •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• hra-ftu-explorer-supporting-information

  Public
  Supporting information page for the FTU Explorer paper (in progress)

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•2•0•Updated Feb 26, 2025Feb 26, 2025

• hra-organ-gallery-supporting-information

  Public
  Supporting Information for "Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas"

  human-reference-atlassupporting-information

  0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• info_vis_client_projects

  Public
  0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• hra-scrollytelling

  Public
  Learn about the HRA through scrollytelling!

  human-reference-atlas

  HTML

  •

  MIT License

  •0•2•0•0•Updated Feb 22, 2025Feb 22, 2025

• hra-cell-distance-analysis

  Public
  Cell Distance Analysis for Spatial Omics Datasets, primarily focused on vascular cells.

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• hra-fibi-images

  Public
  MIT License

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• ccf-research-kaggle-2022

  Public
  Supporting information page for the "Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms" paper

  pythonmachine-learningkaggle+ 1human-reference-atlas

  Python

  •

  MIT License

  •2•1•0•0•Updated Feb 19, 2025Feb 19, 2025

• hra-kg-supporting-information

  Public
  Supporting Information for “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data”

  Jupyter Notebook

  •0•0•2•0•Updated Feb 19, 2025Feb 19, 2025

• hra-mouse-registrations

  Public
  Blender files and models for 5x5 mouse registrations

  human-reference-atlas

  1•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• dvl-llm

  Public
  Data Visualization Literacy Framework + LLMs

  Jupyter Notebook

  •1•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• hra-amap

  Public
  HRA-AMAP: Bidirectional Projections Between Human Atlas Systems for Data and Code Interoperability

  human-reference-atlas

  Jupyter Notebook

  •

  MIT License

  •2•0•11•0•Updated Feb 17, 2025Feb 17, 2025

• hra-ftu-vccf-supporting-information

  Public
  Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •1•2•0•0•Updated Feb 6, 2025Feb 6, 2025

• hra-construction-usage-supporting-information

  Public
  Supporting information page for the "Human BioMolecular Atlas Program (HuBMAP): 3D Reference Atlas Construction and Usage" paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• katy

  Public
  Dr. Katy Borner's Profile Page

  HTML

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• hra-queries

  Public
  A repository for one-off API queries and similar coding experiments with HRA data

  Jupyter Notebook

  •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

• xmacroscope

  Public
  The xMacroscope provides a way for museum visitors to build and interpret visualizations that use data generated by the visitors during their exhibit experience.

  reactvisualizationgraphql+ 6angulartypescriptapollomapboxmuseumsmusetech

  TypeScript

  •

  MIT License

  •3•4•78•3•Updated Jan 7, 2025Jan 7, 2025

• trusted-ai

  Public
  Trusted AI

  TypeScript

  •

  MIT License

  •0•0•53•0•Updated Jan 7, 2025Jan 7, 2025

• spoke-vis

  Public
  SPOKE Visualization

  TypeScript

  •

  MIT License

  •0•0•7•1•Updated Jan 7, 2025Jan 7, 2025

• map4sci

  Public
  Implementation of a graph algorithm that uses a multi level tree based approach for interactive graph visualization with semantic zoom (ZMLT).

  C++

  •

  MIT License

  •0•3•14•2•Updated Jan 7, 2025Jan 7, 2025

• make-a-vis

  Public
  MaV: An online tool for creating visualizations

  TypeScript

  •

  MIT License

  •0•7•75•1•Updated Jan 7, 2025Jan 7, 2025

• hra-3d-cell-generation-api

  Public
  API to generate 3D Cells inside Anatomical Structures

  human-reference-atlas

  C++

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• hra-glb-preprocessor

  Public
  Make meshes manifold and filling holes. Generate OFF file for a single mesh from GLB

  Python

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• hra-node-dist-vis

  Public
  HRA Node Distance Visualization Web Component

  human-reference-atlas

  JavaScript

  •

  MIT License

  •0•2•0•0•Updated Dec 16, 2024Dec 16, 2024

• hra-organ-gallery-in-vr

  Public
  HRA Organ Gallery in VR

  Jupyter Notebook

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• macroscope-kiosk

  Public
  The Macroscope Kiosk is an application to access macroscopes from the Places & Spaces: Mapping Science exhibit

  TypeScript

  •

  MIT License

  •1•0•5•4•Updated Oct 28, 2024Oct 28, 2024