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    • MIT License
      0210Updated Feb 7, 2025Feb 7, 2025
    • This is a script to query ICIs API and get any
      MIT License
      0001Updated Feb 7, 2025Feb 7, 2025
    • Python script to monitor archiving on DNANexus
      Python
      0240Updated Feb 7, 2025Feb 7, 2025
    • Plots BAF and depth of variants from given VCF
      R
      MIT License
      0040Updated Feb 7, 2025Feb 7, 2025
    • automated deletion of NGS .tar files on DNAnexus
      0001Updated Feb 7, 2025Feb 7, 2025
    • Config for the Dias TWE assay
      0100Updated Feb 7, 2025Feb 7, 2025
    • Config for the Dias TSO assay
      Python
      0200Updated Feb 7, 2025Feb 7, 2025
    • Perl
      1192Updated Feb 7, 2025Feb 7, 2025
    • Shell
      MIT License
      0201Updated Feb 6, 2025Feb 6, 2025
    • themis

      Public
      Code for internal bioinformatics team auditing
      Python
      MIT License
      0321Updated Feb 6, 2025Feb 6, 2025
    • A mini uranus mostly nf-core pipeline that incorporates mosdepth, cggpindel (not nf-core) and sentieon bwamem
      Nextflow
      0000Updated Feb 6, 2025Feb 6, 2025
    • Repository of eggd_conductor app and assay config files
      0020Updated Feb 6, 2025Feb 6, 2025
    • Shell
      0060Updated Feb 5, 2025Feb 5, 2025
    • Solid cancer WGS repository to monitor new files and new outputs from WGS workbooks jobs
      MIT License
      0000Updated Feb 5, 2025Feb 5, 2025
    • MegaQC

      Public
      Web application to collect and visualise data across multiple MultiQC runs.
      Python
      GNU General Public License v3.0
      27100Updated Feb 5, 2025Feb 5, 2025
    • Json configuration file for CEN CNV annotation using VEP.
      MIT License
      0010Updated Feb 3, 2025Feb 3, 2025
    • Scripts to convert refseq gff to tsv and convert that tsv into a g2t file
      Python
      0200Updated Feb 3, 2025Feb 3, 2025
    • Check if the 002 jobs completed correctly and sends notifications
      Python
      0100Updated Feb 2, 2025Feb 2, 2025
    • Shell
      0101Updated Feb 1, 2025Feb 1, 2025
    • DNAnexus app for generating xlsx variant workbooks
      Python
      03120Updated Jan 30, 2025Jan 30, 2025
    • Workflow definition for Dias reports
      0110Updated Jan 30, 2025Jan 30, 2025
    • Json configuration file for the implementation of VEP for the CEN assay.
      MIT License
      0110Updated Jan 29, 2025Jan 29, 2025
    • eggd_vep

      Public
      Shell
      0190Updated Jan 29, 2025Jan 29, 2025
    • Json configuration file for the implementation of VEP for the TWE assay.
      MIT License
      0110Updated Jan 29, 2025Jan 29, 2025
    • Json configuration file for the implementation of VEP for the MYE assay.
      0000Updated Jan 28, 2025Jan 28, 2025
    • Shell
      0100Updated Jan 28, 2025Jan 28, 2025
    • athena

      Public
      Provides HTML reports with detailed coverage analysis for clinical NGS data.
      HTML
      MIT License
      24130Updated Jan 28, 2025Jan 28, 2025
    • HTML
      1302Updated Jan 26, 2025Jan 26, 2025
    • Python
      0110Updated Jan 25, 2025Jan 25, 2025
    • MIT License
      0000Updated Jan 23, 2025Jan 23, 2025