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@galosh Genome Analytics Lab of SCHARP at the Hutch

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    5 repositories

    • profillic

      Public
      A suite of programs for estimating parameters of Profile HMMs using Baum-Welch, Conditional Baum-Welch, and both Unconditional and Conditional Quadratic Ascent.
      C++
      •
      GNU General Public License v2.0
      •0•1•3•0•Updated Nov 5, 2015Nov 5, 2015

    • profuse

      Public
      A suite of programs for working with Profile HMMs.
      C++
      •
      GNU General Public License v2.0
      •0•1•2•0•Updated Nov 5, 2015Nov 5, 2015

    • prolific

      Public
      A library of useful C++ classes for working with genomic sequence data and Profile HMMs.
      C++
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Nov 5, 2015Nov 5, 2015

    • profillic-attic

      Public
      Some code fitting into the prolific/profuse/profillic suite, but not yet ready for primetime
      C++
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Oct 23, 2015Oct 23, 2015

    • profillic-hmmer

      Public
      Modified versions of HMMER 3 programs to implement interoperability with galosh profiles (as generated by profillic).
      C++
      •
      GNU General Public License v3.0
      •3•2•6•0•Updated Mar 20, 2013Mar 20, 2013