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    32 repositories

    • adtl

      Public
      Another data transformation language
      jsondata-transformationpythonparser
      Python
      •
      MIT License
      •0•1•4•1•Updated Nov 29, 2024Nov 29, 2024

    • arcmapper

      Public
      Automapper library for ISARIC ARC
      Python
      •
      MIT License
      •0•0•3•0•Updated Nov 27, 2024Nov 27, 2024

    • polyflame

      Public
      Polymorphic Flexible Analytics and Modelling Engine
      analysisfhirisaric3
      Python
      •
      MIT License
      •0•0•2•1•Updated Nov 25, 2024Nov 25, 2024

    • fhirflat

      Public
      ISARIC 3.0 Pipeline - FHIRFlat
      fhirparquetisaric3
      Python
      •
      MIT License
      •0•0•11•3•Updated Nov 25, 2024Nov 25, 2024

    • autoparser

      Public
      Python
      •0•0•0•1•Updated Nov 22, 2024Nov 22, 2024

    • turnkey-curator-portal

      Public
      TypeScript
      •
      MIT License
      •0•0•70•4•Updated Nov 22, 2024Nov 22, 2024

    • InsightBoard

      Public
      A dashboard to upload and manage data and generate reports.
      Python
      •
      MIT License
      •1•3•4•2•Updated Nov 21, 2024Nov 21, 2024

    • olm

      Public
      Office for Linelist Management
      epidemiologyoutbreakslinelistbriefing-report
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • InsightBoard-SampleProject

      Public template
      Sample project for InsightBoard
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • outbreak-data

      Public
      For users of G.h data: notes, timelines, sources, etc.
      MIT License
      •0•0•6•0•Updated Sep 30, 2024Sep 30, 2024

    • outbreak-schema

      Public
      Global.health Day Zero Outbreak schema
      0•2•32•0•Updated Sep 11, 2024Sep 11, 2024

    • woah_wahis_flu_a

      Public
      Repository for code and data associated with influenza A reports in animals to the World Organization for Animal Health
      Python
      •
      Other
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • monkeypox

      Public
      Mpox 2022 repository
      HTML
      •
      Other
      •37•175•13•0•Updated Apr 1, 2024Apr 1, 2024

    • isaric

      Public
      ISARIC Clinical Data Model development
      clinical-datapython
      Python
      •
      MIT License
      •0•4•0•4•Updated Feb 7, 2024Feb 7, 2024

    • monkeypox-viz

      Public template
      Monkeypox map visualization 2022
      TypeScript
      •
      Other
      •0•2•0•0•Updated Nov 10, 2023Nov 10, 2023

    • .github

      Public
      0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • viz

      Public
      Web frontend to visualize disease data
      JavaScript
      •
      MIT License
      •3•0•0•2•Updated May 23, 2023May 23, 2023

    • marburg

      Public
      Marburg 2023 outbreak repository
      open-dataepidemiologyline-listmarburg-virus
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

    • list

      Public
      Repository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.
      epidemiologycurationcovid19
      TypeScript
      •
      MIT License
      •7•39•168•26•Updated Apr 17, 2023Apr 17, 2023

    • covid19-variants-summary

      Public
      This code summarises data from GISAID by epiweek. Outputs and analyses using these data are published in Gonçalves et al. eLife 2022;11:e80556. DOI: https://doi.org/10.7554/eLife.80556
      Jupyter Notebook
      •
      MIT License
      •1•1•1•0•Updated Apr 4, 2023Apr 4, 2023

    • ebola

      Public template
      Ebola Uganda 2022 repository
      Python
      •
      MIT License
      •1•5•0•0•Updated Jan 20, 2023Jan 20, 2023

    • common

      Public
      Common geographical data
      Python
      •0•1•0•1•Updated Dec 9, 2022Dec 9, 2022

    • ebola-viz

      Public
      Map and chart visualizations of Ebola disease
      TypeScript
      •
      Other
      •0•0•0•0•Updated Dec 5, 2022Dec 5, 2022

    • Ebola_SitReps_Uganda_2022

      Public
      Digitizing Ebola SitReps from Uganda
      R
      •
      MIT License
      •1•0•0•0•Updated Nov 9, 2022Nov 9, 2022

    • who-report-extractor

      Public
      Extracts information from WHO briefing report PDFs
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 27, 2022Oct 27, 2022

    • react

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Oct 6, 2022Oct 6, 2022

    • monkeypox-report

      Public archive
      Monkeypox summary report
      reportepidemiologymonkeypox
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 23, 2022Sep 23, 2022

    • covid19-omicron

      Public
      Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern
      omicroncovid19dataset
      Shell
      •
      MIT License
      •0•10•0•0•Updated Jan 25, 2022Jan 25, 2022

    • viz-react

      Public
      React visualizations for Map
      TypeScript
      •0•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • covid-19

      Public
      Data for the "covid-19" disease.
      Python
      •2•3•0•0•Updated Jan 31, 2021Jan 31, 2021