insitro

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10 repositories

AllelicSeries
Public
Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutations have increasingly large phenotypic effects.
R
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Other
•1•12•0•0•Updated Nov 22, 2024Nov 22, 2024
insitro-research
Public
Insitro's repository for public research code and data
Jupyter Notebook
•9•22•0•0•Updated Nov 14, 2024Nov 14, 2024
contrastive_vi_plus
Public
Modeling variable guide efficiency in pooled CRISPR screens with ContrastiveVI+
Python
•1•1•0•0•Updated Nov 14, 2024Nov 14, 2024
kindel
Public
KinDEL is a large DNA-encoded library dataset containing two kinase targets (DDR1 and MAPK14) for benchmarking machine learning models.
machine-learning dataset kinase dna-encoded-library
Python
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Other
•3•14•0•0•Updated Oct 22, 2024Oct 22, 2024
EmbedGEM
Public
EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery
Python
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Apache License 2.0
•1•20•0•0•Updated Oct 3, 2024Oct 3, 2024
redun
Public
Yet another redundant workflow engine
python docker aws data-science bioinformatics etl workflow-engine gcp ml data-engineering
Python
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Apache License 2.0
•45•523•26•4•Updated Sep 3, 2024Sep 3, 2024
ChannelViT
Public
Channel Vision Transformers: An Image Is Worth C x 16 x 16 Words
machine-learning computer-vision vision-transformer
Python
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Other
•6•48•5•0•Updated Feb 22, 2024Feb 22, 2024
sams-vae
Public
Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" by Bereket & Karaletsos published in Neurips 2023
Jupyter Notebook
•3•9•0•0•Updated Oct 20, 2023Oct 20, 2023
ContextViT
Public
Contextual Vision Transformers for Robust Representation Learning
machine-learning computer-vision artificial-intelligence vision-transformer icml-2023
Python
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Other
•2•12•0•0•Updated Oct 19, 2023Oct 19, 2023
opentelemetry-collector-contrib
Public
Contrib repository for the OpenTelemetry Collector
Go
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Apache License 2.0
•2.4k•0•0•0•Updated Nov 30, 2022Nov 30, 2022