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    17 repositories

    • kipoi.github.io

      Public
      kipoi.org
      HTML
      •1•1•0•1•Updated Nov 7, 2024Nov 7, 2024

    • website

      Public
      http://kipoi.org
      JavaScript
      •3•4•15•0•Updated Nov 7, 2024Nov 7, 2024

    • kipoiseq

      Public
      Standard set of data-loaders for training and making predictions for DNA sequence-based models.
      Python
      •
      MIT License
      •13•77•20•8•Updated Sep 3, 2024Sep 3, 2024

    • kipoi-veff2

      Public
      Variant effect prediction with a subset of models in Kipoi
      Python
      •
      MIT License
      •1•2•2•1•Updated Jul 30, 2024Jul 30, 2024

    • demo-webapp-frontend

      Public
      React app for demo webapp
      JavaScript
      •
      MIT License
      •0•0•0•4•Updated Jul 29, 2024Jul 29, 2024

    • models

      Public
      Model zoo for genomics
      Python
      •
      MIT License
      •60•166•43•0•Updated Jul 24, 2024Jul 24, 2024

    • kipoi

      Public
      Kipoi's model zoo API
      Jupyter Notebook
      •
      MIT License
      •41•234•58•3•Updated Apr 26, 2024Apr 26, 2024

    • kipoi-conda

      Public
      conda and pip related functionality for the kipoi project
      Python
      •
      MIT License
      •1•0•0•2•Updated Jul 26, 2023Jul 26, 2023

    • kipoi-containers

      Public
      This repository contains necessary infrastructure elements for automatically adding and updating docker and singularity images for models and model groups in Kipoi model zoo. These images are pre-activated with a compatible conda environment where all the model (group) specific dependencies have been installed.
      condasingularitydocker
      Python
      •
      MIT License
      •1•2•0•2•Updated Jul 14, 2023Jul 14, 2023

    • kipoi-webapp-router

      Public
      Router for Kipoi webapp (routing between Kipoi environments)
      Python
      •0•0•0•2•Updated Feb 15, 2023Feb 15, 2023

    • kipoi-utils

      Public
      utils used in various packages related to kipoi
      Python
      •
      MIT License
      •4•0•2•0•Updated Nov 4, 2022Nov 4, 2022

    • pydoc-markdown

      Public
      Create Python API documentation in Markdown format.
      Python
      •
      MIT License
      •105•0•0•0•Updated Mar 28, 2022Mar 28, 2022

    • kipoi-veff

      Public
      Variant effect prediction plugin for Kipoi
      Jupyter Notebook
      •
      MIT License
      •5•6•17•2•Updated Feb 7, 2022Feb 7, 2022

    • manuscript

      Public
      Code for the Kipoi manuscript
      Jupyter Notebook
      •2•7•6•0•Updated Oct 3, 2019Oct 3, 2019

    • kipoi-webapp-backend

      Public
      Backend app running on Flask for Kipoi webapp
      Python
      •0•0•0•0•Updated Jul 31, 2019Jul 31, 2019

    • kipoi-interpret

      Public
      Model interpretation plugin for Kipoi
      Python
      •
      MIT License
      •2•3•2•0•Updated Mar 1, 2019Mar 1, 2019

    • examples

      Public
      A repository to host extended examples and tutorials.
      Jupyter Notebook
      •
      MIT License
      •1•11•1•0•Updated Nov 23, 2018Nov 23, 2018