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    16 repositories

    • SearcHPV

      Public
      An HPV integration point detection tool for targeted capture sequencing data
      Python
      •
      MIT License
      •2•2•0•0•Updated Oct 30, 2024Oct 30, 2024

    • virusIntegrationViz

      Public
      This repo includes scripts to visualize the contig at virus integration from SearcHPV
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • mills-lab.github.io

      Public
      Website for the Mills Laboratory at the University of Michigan
      HTML
      •
      MIT License
      •2•0•0•4•Updated Sep 4, 2024Sep 4, 2024

    • numts-and-aging-in-fibroblasts-and-brains

      Public
      Shell
      •1•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • Scoval

      Public
      Command line and supplements for the project
      Python
      •
      MIT License
      •1•2•0•0•Updated Sep 6, 2023Sep 6, 2023

    • PALMER

      Public
      Pre-mAsking Long reads for Mobile Element inseRtion
      C++
      •
      MIT License
      •5•10•0•0•Updated Feb 27, 2023Feb 27, 2023

    • vapor

      Public
      Tool for the validation of structural genomic rearrangements using long read sequence data
      Python
      •2•9•6•0•Updated Sep 14, 2022Sep 14, 2022

    • dinumt

      Public
      Perl
      •8•13•1•0•Updated Oct 29, 2021Oct 29, 2021

    • primate_numt

      Public
      all scripts used for primate numts
      R
      •1•2•0•0•Updated Oct 29, 2021Oct 29, 2021

    • bamnostic

      Public
      a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•0•0•0•Updated Dec 3, 2019Dec 3, 2019

    • PALMER_Pipelines

      Public
      Command lines and supplements for the project
      C++
      •1•4•0•0•Updated Oct 31, 2019Oct 31, 2019

    • spectre

      Public
      Spectral coherence classification of actively translated regions in ribosome profiling sequence data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•6•0•0•Updated Feb 7, 2019Feb 7, 2019

    • svelter

      Public
      Approach to identify simple and complex structural genomic rearrangements using a randomized approach
      Python
      •
      MIT License
      •3•20•10•0•Updated Nov 14, 2018Nov 14, 2018

    • U6L1

      Public
      Python
      •0•0•0•0•Updated Jan 30, 2018Jan 30, 2018

    • apps

      Public
      C++
      •2•0•0•0•Updated Aug 15, 2016Aug 15, 2016

    • canny

      Public
      Perl
      •0•1•0•0•Updated Aug 19, 2015Aug 19, 2015