NewAtlantis Labs

All

15 repositories

hyena-postTrain-loop
Public
Jupyter Notebook
•0•1•2•0•Updated Nov 15, 2024Nov 15, 2024
pykofamsearch-stable
Public
Fast implementation of KofamScan optimized for high-memory systems using PyHmmer
Python
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MIT License
•0•1•0•0•Updated Nov 8, 2024Nov 8, 2024
pyhmmsearch-stable
Public
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer
Python
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MIT License
•0•0•0•0•Updated Oct 21, 2024Oct 21, 2024
veba-stable
Public
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes. Built by @jolespin, stable maintenance and containerization from NewAtlantis
Python
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GNU Affero General Public License v3.0
•9•3•0•0•Updated Sep 25, 2024Sep 25, 2024
na-erdos-fellows-monorepo
Public
The central location for code in the NewAtlantis fellowship program
Jupyter Notebook
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Apache License 2.0
•21•3•0•1•Updated Aug 16, 2024Aug 16, 2024
bioprospecting
Public
Jupyter Notebook
•2•1•2•0•Updated Nov 24, 2023Nov 24, 2023
nal-notebook-templates
Public
a collection of notebook templates that are reflected on the cloud lab
Jupyter Notebook
•1•0•0•1•Updated Nov 2, 2023Nov 2, 2023
Living-Oceans
Public
🌊 Robust workflows for gathering data about your local ocean.
python bioinformatics metagenomics python3 bioinformatics-pipeline metagenomics-data metagenomics-toolkit jyputer-notebook desci
Jupyter Notebook
•1•14•0•0•Updated Jul 19, 2023Jul 19, 2023
Mg-Traits
Public
Shell
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 13, 2023Jul 13, 2023
.github
Public
0•0•0•0•Updated Jun 20, 2023Jun 20, 2023
protocol-labs-demo
Public
Jupyter Notebook
•0•1•0•0•Updated Jun 7, 2023Jun 7, 2023
Metagenomics
Public
🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean
python bioinformatics ocean metagenomics python3 bioinformatics-pipeline plankton metagenomic-analysis gitcoin metagenomic-pipeline
Jupyter Notebook
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Other
•2•7•0•0•Updated Dec 18, 2022Dec 18, 2022
DiffDock_GPU_Stable
Public
Dockerized Version of the DiffDock model from MIT, Stable Release Maintained through NewAtlantis
Jupyter Notebook
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Apache License 2.0
•5•0•0•0•Updated Dec 13, 2022Dec 13, 2022
presentations
Public
Materials notebooks for presentation/communications
0•0•0•0•Updated Nov 10, 2022Nov 10, 2022
DeepLabCut
Public
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Python
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GNU Lesser General Public License v3.0
•1.7k•0•0•0•Updated Jul 29, 2022Jul 29, 2022