Open Problems in Single-Cell Analysis

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30 packages

control_methods/no_integration_batch
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

116
data_processors/process_dataset
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

116
methods/geneformer
Published Jan 6, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

116
control_methods/embed_cell_types
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

114
methods/batchelor_fastmnn
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

114
methods/scalex
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

105
datasets/normalization/log_cp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

104
methods/harmonypy
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

103
control_methods/positive_control
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

102
methods/harmony
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

101
robustness_analysis/causal_grn
Published Sep 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

77
methods/scimilarity
Published Oct 11, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

76
methods/scgpt
Published Nov 8, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

66
methods/umap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

65
control_methods/true_features
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

65
methods/pymde
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

65
control_methods/spectral_features
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

65
methods/pca
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

65
methods/uce
Published Nov 8, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

64
methods/ivis
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

63
methods/tsne
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

63
methods/phate
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

63
data_processors/process_dataset
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

63
methods/densmap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

63
methods/neuralee
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

63
methods/scgpt_finetuned
Published Jan 20, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

62
methods/scgpt_zeroshot
Published Jan 20, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

58
control_methods/random_features
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

57
methods/knnr_py
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

56
data_processors/process_dataset
Published Aug 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

56