Open Problems in Single-Cell Analysis

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30 packages

methods_transcript_assignment/basic_transcript_assignment
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

20
methods_calculate_cell_volume/alpha_shapes
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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grn_methods/grnboost2
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

19
control_methods/pearson_causal
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

18
methods_qc_filter/basic_qc_filter
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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data_processors/process_dataset
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

18
process_dataset/split_sc
Published Oct 30, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

18
process_dataset/add_uns_metadata
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

18
methods_count_aggregation/basic_count_aggregation
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

17
process_dataset/compute_pseudobulk
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

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process_dataset/filter_vars
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

17
grn_methods/scgpt
Published Sep 9, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

16
grn_methods/pidc
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

15
create_component
Published Aug 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

15
methods_normalization/normalize_by_volume
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

15
grn_methods/ppcor
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

15
methods/simplemlp_train
Published Jan 8, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

14
grn_methods/celloracle
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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grn_methods/scenic
Published Sep 14, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

10
create_task_readme
Published Aug 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

9
datasets/processors/hvg
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

8
datasets/processors/pca
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

8
datasets/processors/knn
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

8
methods/scprint
Published Nov 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

8
perturbation/sc_counts
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

7
project/fetch_task_run
Published Oct 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

7
grn_methods/granie
Published Aug 16, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

7
datasets/loaders/tenx_xenium
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

6
methods/transformer_ensemble
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

6
control_methods/zeros
Published Jun 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_perturbation_prediction

6