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    12 repositories

    • variantValidator

      Public
      Public repository for VariantValidator project
      Python
      •
      GNU Affero General Public License v3.0
      •21•71•85•2•Updated Dec 11, 2024Dec 11, 2024

    • NextFlow_RD_Genomic_VQR

      Public
      NextFlow pipeline with BQSR and VQSR applied
      Nextflow
      •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

    • rest_variantValidator

      Public
      REST Interface for VariantValidator. Includes docker container
      Python
      •
      GNU Affero General Public License v3.0
      •46•11•20•10•Updated Nov 15, 2024Nov 15, 2024

    • VVweb

      Public
      pythondjango
      HTML
      •
      GNU Affero General Public License v3.0
      •0•1•16•6•Updated Nov 11, 2024Nov 11, 2024

    • vv_hgvs

      Public
      Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
      Python
      •
      Apache License 2.0
      •94•6•6•2•Updated Aug 5, 2024Aug 5, 2024

    • variantFormatter

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •4•4•3•0•Updated Jul 25, 2024Jul 25, 2024

    • NextFlow_RD_Genomic_QR

      Public
      NextFlow pipeline with BQSR and VQSR applied
      Nextflow
      •12•1•0•0•Updated May 10, 2024May 10, 2024

    • populate_vvdb

      Public
      Code used to populate the validator database used by VV
      Python
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • variantAnnotator

      Public
      Building an interactive app that validates a variant description in the HGVS format and adds relevant annotations from different resources based on user requests
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 26, 2023Apr 26, 2023

    • VV_databases

      Public
      Database dumps for VariantValidator
      HTML
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Nov 22, 2021Nov 22, 2021

    • vv-flask-restful-swagger

      Public
      A Swagger spec extractor for flask-restful
      JavaScript
      •
      MIT License
      •215•0•0•0•Updated Aug 19, 2019Aug 19, 2019

    • rest_variantValidator_manuals

      Public
      Jupyter notebooks containing examples of effective use of the VariantValidartor rest API http://rest.variantvalidator.org
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Aug 1, 2019Aug 1, 2019