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    26 repositories

    • ComputationThruDynamicsBenchmark

      Public
      Python
      •10•12•0•2•Updated Jan 2, 2025Jan 2, 2025

    • falcon-challenge

      Public
      Jupyter Notebook
      •
      MIT License
      •2•11•1•0•Updated Dec 17, 2024Dec 17, 2024

    • MUsim

      Public
      class for motor unit simulations, produce firing rates according to force profiles, operates on size principle
      0•3•2•0•Updated Dec 9, 2024Dec 9, 2024

    • EMUsort

      Public
      A command-line tool for high-performance spike sorting of multi-channel, single-unit electromyography
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Dec 9, 2024Dec 9, 2024

    • brand-speech

      Public
      Python
      •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • falcon-site-old

      Public
      Jupyter Notebook
      •8•0•0•1•Updated Oct 21, 2024Oct 21, 2024

    • rat-loco

      Public
      Functions for rat locomotion data processing and analysis
      Python
      •1•2•0•0•Updated Sep 18, 2024Sep 18, 2024

    • Kilosort4

      Public
      Modified fork of Kilosort4 for use with EMUsort
      Python
      •
      GNU General Public License v3.0
      •252•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • spikeinterface

      Public
      Modified version of spikeinterface for use with EMUsort
      Python
      •
      MIT License
      •190•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • power-calculations

      Public
      Detailing the power calculations in Karpowicz et al., 2024.
      Jupyter Notebook
      •0•0•0•0•Updated Aug 4, 2024Aug 4, 2024

    • academic-file-converter

      Public
      📚 Import Bibtex publications and Jupyter Notebook blog posts into your Markdown website or book. 将Bibtex转换为Markdown网站
      Python
      •
      MIT License
      •104•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • autolfads-tf2

      Public
      A TensorFlow 2.0 implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.
      deep-learningneurosciencehyperparameter-optimizationdynamical-systems
      Python
      •
      MIT License
      •9•19•5•1•Updated Aug 22, 2023Aug 22, 2023

    • gcp-tutorial-pack

      Public
      MATLAB
      •1•0•0•1•Updated Aug 1, 2023Aug 1, 2023

    • expressive-latent-dynamics-paper

      Public
      Code to reproduce experiments from Sedler, A, Versteeg, C, Pandarinath, C. "Expressive architectures enhance interpretability of dynamics-based neural population models". Neurons, Behavior, Data analysis, and Theory 2023.
      recurrent-neural-networkscomputational-neurosciencedynamical-systemsdeep-learning
      Python
      •
      Apache License 2.0
      •3•10•0•0•Updated Apr 4, 2023Apr 4, 2023

    • CtDBenchmark_OLD

      Public
      Website for the Computation-Through-Dynamics Benchmark
      Jupyter Notebook
      •8•0•0•0•Updated Nov 15, 2022Nov 15, 2022

    • autolfads

      Public
      Generalized modeling of single-trial neural population dynamics.
      Apache License 2.0
      •2•7•3•0•Updated Aug 29, 2022Aug 29, 2022

    • lfads-cd

      Public
      Implementation of latent factor analysis via dynamical systems (LFADS) model with coordinated dropout (CD) and sample validation (SV)
      Python
      •3•8•1•0•Updated Apr 28, 2022Apr 28, 2022

    • lfads-tutorial

      Public
      Jupyter Notebook
      •1•4•0•0•Updated Feb 27, 2022Feb 27, 2022

    • neural-data-transformers

      Public
      Python
      •
      The Unlicense
      •20•72•0•0•Updated Feb 25, 2022Feb 25, 2022

    • sbtt-demo

      Public
      A toy example demonstrating selective backpropagation through time (SBTT).
      Python
      •
      MIT License
      •3•6•1•0•Updated Nov 9, 2021Nov 9, 2021

    • rodent-behavior-analysis

      Public
      Code for analyzing rodent behavioral data
      MATLAB
      •0•0•0•0•Updated Oct 20, 2021Oct 20, 2021

    • lfads_tf1

      Public
      The Tensorflow 1.15 version of LFADS
      Python
      •1•0•0•0•Updated May 21, 2021May 21, 2021

    • lfads-run-manager

      Public archive
      Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)
      MATLAB
      •
      Apache License 2.0
      •27•0•0•0•Updated Feb 6, 2021Feb 6, 2021

    • dPCA

      Public
      An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)
      Jupyter Notebook
      •
      MIT License
      •94•0•0•0•Updated Feb 1, 2021Feb 1, 2021

    • stabilizedbci

      Public
      Companion code for the paper: "Stabilization of a brain-computer interface via the alignment of low-dimensional spaces of neural activity"
      MATLAB
      •
      MIT License
      •7•0•0•0•Updated Sep 18, 2020Sep 18, 2020

    • demos

      Public
      Various utility scripts and demo notebooks
      Jupyter Notebook
      •0•0•0•0•Updated Apr 29, 2020Apr 29, 2020