Repositories list

• hackin-omics-2022

  Public
  A repository with details related to our hackathon including a list of projects, resources, and our goals.

  hackathonhackin-omics-2022biohackathon+ 1ubrite

  MIT License

  •0•3•0•0•Updated Aug 22, 2024Aug 22, 2024

• rlhf_attis2023

  Public
  Google Colab friendly version of TRL's https://github.com/lvwerra/trl/blob/main/examples/toxicity/scripts/gpt-j-6b-toxicity.py example for ATTIS 2023.

  Jupyter Notebook

  •0•4•0•0•Updated Apr 21, 2023Apr 21, 2023

• gcp-for-bioinformatics

  Public
  GCP for Bioinformatics Researchers

  Jupyter Notebook

  •

  Apache License 2.0

  •69•0•0•0•Updated Apr 10, 2023Apr 10, 2023

• u-brite-bootcamp

  Public
  All presentation slides for the U-BRITE bootcamp 07/29/2022

  pagerseashackin-omics-2022+ 2ubritebiohakathon

  0•5•0•0•Updated Jan 25, 2023Jan 25, 2023

• SNVariome

  Public
  Integrating protein-protein interactions and protein structure to enhance the clinical variant interactome.

  hackin-omics-2022

  R

  •

  MIT License

  •0•2•9•0•Updated Aug 22, 2022Aug 22, 2022

• HeriVar

  Public
  Quantifying the combined heritability of a trait based on a multi-ethnic LD panel with equal distribution of samples among each ancestry group.

  Shell

  •

  MIT License

  •2•1•0•0•Updated Aug 19, 2022Aug 19, 2022

• mCIRCrna

  Public
  Integrating circadian transcriptomes with muscle snRNA-seq data

  HTML

  •

  MIT License

  •5•4•0•0•Updated Aug 12, 2022Aug 12, 2022

• MedvAIsor

  Public
  MedvAIsor( Medicine + Advisor + AI) is AI-based personalized drug screening for cancer treatment

  Jupyter Notebook

  •

  MIT License

  •1•5•0•0•Updated Aug 11, 2022Aug 11, 2022

• Single-cell-reciter

  Public
  Single-cell topics modeling using deep learning and multi-omics enrichment analysis.

  Jupyter Notebook

  •

  MIT License

  •1•2•0•0•Updated Aug 11, 2022Aug 11, 2022

• ReproCanAtlas

  Public
  Identifying cancer-related signatures of endometrial and ovarian cancer to develop a reproductive cancer atlas.

  bioinformaticscancersignatures+ 5multiomicsendometrial-cancerhackin-omics-2022biohackathonubrite

  HTML

  •

  MIT License

  •0•2•0•2•Updated Aug 11, 2022Aug 11, 2022

• ImageNomeR

  Public
  Image, Genome/Transcriptome Explorer (fMRI)

  hackin-omics-2022biohackathonubrite

  Jupyter Notebook

  •

  MIT License

  •3•2•0•0•Updated Aug 10, 2022Aug 10, 2022

• team_papaki

  Public
  Integrating multi-omics data with autoencoders for breast cancer survival prediction.

  R

  •

  MIT License

  •0•2•0•0•Updated Aug 10, 2022Aug 10, 2022

• TeamADGuy

  Public
  Using Graph Neural Network to decrypt Personalized Medicare in Alzheimer's Disease

  Jupyter Notebook

  •

  MIT License

  •2•3•0•0•Updated Aug 10, 2022Aug 10, 2022

• team-leaders-2022

  Public
  A repository to share resources and a readiness checklist with team leaders.

  hackin-omics-2022

  MIT License

  •10•0•1•0•Updated Aug 9, 2022Aug 9, 2022

• o-miner

  Public
  Patient stratification and molecular mechanism identification using patient clinotypes and transcriptomics embeddings

  tcgamethylationmicrobiome+ 2transcriptomicsmultiomics

  Jupyter Notebook

  •

  MIT License

  •2•1•0•0•Updated Aug 7, 2022Aug 7, 2022

• BiocSwirl

  Public
  The repository for the BiocSwirl content for the Ubrite hackathon 2022

  HTML

  •

  MIT License

  •0•2•0•0•Updated Aug 7, 2022Aug 7, 2022

• canAI

  Public
  Comparing feature extraction methods for biomarker discovery in a prostate-cancer study.

  hackin-omics-2022biohackathon

  Jupyter Notebook

  •

  MIT License

  •1•6•0•0•Updated Aug 7, 2022Aug 7, 2022

• TeamVecna-scDehashR

  Public
  Rshiny based Analysis and Visualization tool for single cell pooled sequencing data (Hashed data. e.g CITE-Seq)

  MIT License

  •0•3•0•0•Updated Aug 4, 2022Aug 4, 2022

• SigSPLICE

  Public
  Single Cell Splicing Analysis of Pancreatic Neuroendocrine Cancer

  cancersingle-cellhackin-omics-2022

  MIT License

  •1•2•0•0•Updated Aug 4, 2022Aug 4, 2022

• team-repo-template

  Public template
  A template repository for teams during Hackin' Omics 2022.

  hackin-omics-2022

  MIT License

  •1•2•0•0•Updated Jul 27, 2022Jul 27, 2022

• 2022-07-26_Hackathon_Research_Computing

  Public
  Research Computing tools and information created for the 2022 Hackin Omics hackathon.

  hackathonhackin-omics-2022ubrite+ 1uabrc

  MIT License

  •0•1•0•0•Updated Jul 26, 2022Jul 26, 2022

• LDpredChrByChr

  Public
  Make LDpred run chromosome by chromosome

  Python

  •5•0•0•0•Updated Jul 15, 2019Jul 15, 2019