Repositories list

• infrastructure-playbook

  Public
  Ansible playbook for managing UseGalaxy.eu infrastructure.

  ansible

  Jinja

  •

  MIT License

  •100•18•19•28•Updated Mar 10, 2025Mar 10, 2025

• operations

  Public
  usegalaxy.eu operations

  documentationoperationsusegalaxy-eu+ 1usegalaxy

  Creative Commons Attribution 4.0 International

  •8•4•3•0•Updated Mar 10, 2025Mar 10, 2025

• vgcn-infrastructure

  Public
  Manage the VGCN Infrastructure https://github.com/usegalaxy-eu/vgcn/

  Python

  •

  GNU General Public License v3.0

  •6•4•1•5•Updated Mar 10, 2025Mar 10, 2025

• usegalaxy-eu.github.io

  Public
  Deployed website (source is in https://github.com/usegalaxy-eu/website )

  HTML

  •

  MIT License

  •3•1•0•2•Updated Mar 10, 2025Mar 10, 2025

• website

  Public
  UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)

  TeX

  •

  MIT License

  •117•19•29•8•Updated Mar 10, 2025Mar 10, 2025

• galaxy-social

  Public
  Repository for democratising of Galaxy's social media activity - encourage collaboration, editing, peer-review of toots 🐘 and more

  Python

  •

  Creative Commons Zero v1.0 Universal

  •9•6•14•27•Updated Mar 9, 2025Mar 9, 2025

• usegalaxy-eu-tools

  Public
  List of tools included in https://usegalaxy.eu

  toolsgalaxyproject

  Python

  •

  MIT License

  •131•26•34•5•Updated Mar 9, 2025Mar 9, 2025

• FAIRyMAGs

  Public
  FAIRyMAGs - BFSP Project Management

  MIT License

  •2•1•35•0•Updated Mar 6, 2025Mar 6, 2025

• docker-vpt

  Public
  Docker image with VPT (The Vizgen Post-processing Tool)

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1k•3•6•2•Updated Mar 5, 2025Mar 5, 2025

• vgcn

  Public
  Virtual Galaxy Compute Nodes (vgcn)

  ansiblebioinformaticspacker+ 2virtualizationusegalaxy

  Python

  •9•6•6•4•Updated Mar 5, 2025Mar 5, 2025

• ansible-certbot

  Public
  Shell

  •

  MIT License

  •5•0•2•3•Updated Mar 3, 2025Mar 3, 2025

• ansible-gie-proxy

  Public
  Ansible Role for setting up the Node.js proxy for Galaxy Interactive Environments/Tools

  Jinja

  •3•0•2•0•Updated Mar 3, 2025Mar 3, 2025

• environmental_impact

  Public
  Environmental Impact

  MIT License

  •2•8•10•0•Updated Mar 2, 2025Mar 2, 2025

• microgalaxy_paper_2025

  Public
  Jupyter Notebook

  •

  MIT License

  •2•1•3•1•Updated Feb 27, 2025Feb 27, 2025

• mounts

  Public
  A single place to maintain our mountpoints

  Jinja

  •

  MIT License

  •3•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• infrastructure

  Public
  All of Galaxyproject EU's cloud infrastructure.

  HCL

  •

  MIT License

  •25•8•1•1•Updated Feb 25, 2025Feb 25, 2025

• docker-cellxgene

  Public
  Docker image with CELLxGENE

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Feb 22, 2025Feb 22, 2025

• ansible-dnbd3

  Public
  Ansible role that sets up a DNBD3 server or proxy

  Jinja

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• docker-cellxgene-mouse-sciatic-nerve

  Public
  Docker image to visualize mouse sciatic nerve data with cellxgene

  Dockerfile

  •

  MIT License

  •1•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• docker-cellxgene-vip

  Public
  Docker image with CELLxGENE and the VIP plugins

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• ansible-rustus

  Public
  Ansible role for installing rustus, a TUS protocol implementation written in Rust.

  Jinja

  •

  MIT License

  •1•1•1•0•Updated Feb 20, 2025Feb 20, 2025

• tpv-metascheduler-api

  Public
  Metascheduler for TPV as Service

  Python

  •

  MIT License

  •5•0•7•1•Updated Feb 18, 2025Feb 18, 2025

• pulsar-network-docs

  Public
  Documentation for the Galaxy Pulsar network

  Python

  •

  Creative Commons Attribution 4.0 International

  •5•1•4•2•Updated Feb 17, 2025Feb 17, 2025

• pulsar-deployment

  Public
  Various terraform stuff

  HCL

  •

  GNU General Public License v3.0

  •14•3•2•3•Updated Feb 17, 2025Feb 17, 2025

• ena-upload-cli

  Public
  ENA upload tool - script your Open Data upload to the European Nucleotide Archive

  Python

  •

  MIT License

  •16•28•8•0•Updated Feb 17, 2025Feb 17, 2025

• intergalactic-most-wanted-list

  Public
  A database for malware checksums for use with the WallE malware cleanup script

  MIT License

  •2•1•0•0•Updated Feb 16, 2025Feb 16, 2025

• PathoGFAIR

  Public
  PathoGFAIR: Galaxy FAIR Workflows for Pathogen Detection and Samples Comparison

  visualizationdata-analysisgalaxy+ 2workflowspathogens

  Jupyter Notebook

  •

  MIT License

  •3•2•0•0•Updated Feb 12, 2025Feb 12, 2025

• shared-data

  Public
  Our shared data

  Shell

  •5•6•3•2•Updated Feb 6, 2025Feb 6, 2025

• docker-copasi

  Public
  Docker image for COPASI to be used as Galaxy IT

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jan 26, 2025Jan 26, 2025