Repositories list

• usegalaxy-eu.github.io

  Public
  Deployed website (source is in https://github.com/usegalaxy-eu/website )

  HTML

  •

  MIT License

  •3•1•0•2•Updated Feb 6, 2025Feb 6, 2025

• shared-data

  Public
  Our shared data

  Shell

  •5•6•3•2•Updated Feb 6, 2025Feb 6, 2025

• usegalaxy-eu-tools

  Public
  List of tools included in https://usegalaxy.eu

  toolsgalaxyproject

  Python

  •

  MIT License

  •130•26•33•5•Updated Feb 5, 2025Feb 5, 2025

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1k•3•5•2•Updated Feb 4, 2025Feb 4, 2025

• microgalaxy_paper_2025

  Public
  Jupyter Notebook

  •

  MIT License

  •2•1•3•1•Updated Feb 4, 2025Feb 4, 2025

• galaxy-social

  Public
  Repository for democratising of Galaxy's social media activity - encourage collaboration, editing, peer-review of toots 🐘 and more

  Python

  •

  Creative Commons Zero v1.0 Universal

  •9•6•14•16•Updated Feb 4, 2025Feb 4, 2025

• ena-upload-cli

  Public
  ENA upload tool - script your Open Data upload to the European Nucleotide Archive

  Python

  •

  MIT License

  •16•28•9•1•Updated Feb 3, 2025Feb 3, 2025

• ansible-rustus

  Public
  Ansible role for installing rustus, a TUS protocol implementation written in Rust.

  Jinja

  •

  MIT License

  •1•1•1•0•Updated Feb 3, 2025Feb 3, 2025

• infrastructure-playbook

  Public
  Ansible playbook for managing UseGalaxy.eu infrastructure.

  ansible

  Jinja

  •

  MIT License

  •98•18•19•33•Updated Feb 3, 2025Feb 3, 2025

• website

  Public
  UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)

  TeX

  •

  MIT License

  •116•19•29•9•Updated Feb 2, 2025Feb 2, 2025

• docker-cellxgene-mouse-sciatic-nerve

  Public
  Docker image to visualize mouse sciatic nerve data with cellxgene

  Dockerfile

  •

  MIT License

  •1•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• vgcn-infrastructure

  Public
  Manage the VGCN Infrastructure https://github.com/usegalaxy-eu/vgcn/

  Python

  •

  GNU General Public License v3.0

  •6•4•1•5•Updated Jan 28, 2025Jan 28, 2025

• docker-copasi

  Public
  Docker image for COPASI to be used as Galaxy IT

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jan 26, 2025Jan 26, 2025

• PathoGFAIR

  Public
  PathoGFAIR: Galaxy FAIR Workflows for Pathogen Detection and Samples Comparison

  visualizationdata-analysisgalaxy+ 2workflowspathogens

  Jupyter Notebook

  •

  MIT License

  •3•2•0•0•Updated Jan 20, 2025Jan 20, 2025

• galaxy-social-assistant

  Public
  Python

  •

  MIT License

  •1•0•0•1•Updated Jan 16, 2025Jan 16, 2025

• WallE

  Public
  Ansible role for a python script that fetches (toolname filtered) running jobs, calculates checksums for all files in the jobworking directory and compares them to a database.

  securitymalware-analysis

  Python

  •

  MIT License

  •2•0•3•0•Updated Jan 16, 2025Jan 16, 2025

• ansible-tftp

  Public
  Ansible role that sets up a TFTP server

  Jinja

  •

  MIT License

  •0•1•0•0•Updated Jan 15, 2025Jan 15, 2025

• FAIRyMAGs

  Public
  FAIRyMAGs - BFSP Project Management

  MIT License

  •0•1•30•0•Updated Jan 14, 2025Jan 14, 2025

• ansible-cvmfs

  Public
  An Ansible role for installing and configuring CernVM-FS (CVMFS)

  C

  •17•1•0•0•Updated Jan 13, 2025Jan 13, 2025

• vgcn

  Public
  Virtual Galaxy Compute Nodes (vgcn)

  ansiblebioinformaticspacker+ 2virtualizationusegalaxy

  Python

  •9•6•6•4•Updated Jan 10, 2025Jan 10, 2025

• file-source-plugins

  Public
  A resource of pluggable Galaxy file source plugins

  MIT License

  •1•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• ansible-dnbd3

  Public
  Ansible role that sets up a DNBD3 server or proxy

  Jinja

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• infrastructure

  Public
  All of Galaxyproject EU's cloud infrastructure.

  HCL

  •

  MIT License

  •25•8•1•2•Updated Jan 8, 2025Jan 8, 2025

• operations

  Public
  usegalaxy.eu operations

  documentationoperationsusegalaxy-eu+ 1usegalaxy

  Creative Commons Attribution 4.0 International

  •8•4•3•0•Updated Jan 8, 2025Jan 8, 2025

• tpv-metascheduler-api

  Public
  Metascheduler for TPV as Service

  Python

  •

  MIT License

  •5•0•7•1•Updated Jan 6, 2025Jan 6, 2025

• mounts

  Public
  A single place to maintain our mountpoints

  Jinja

  •

  MIT License

  •3•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• grafana-dashboards

  Public
  UseGalaxy's Grafana Dashboards

  3•2•0•1•Updated Nov 28, 2024Nov 28, 2024

• ansible-fw-glxeu-generic

  Public
  Generic firewall setup for usegalaxy-eu

  MIT License

  •0•0•0•1•Updated Nov 27, 2024Nov 27, 2024

• ansible-remap-user

  Public
  Remap 999:999 (uid:gid) to Galaxy user as needed by our network configuration

  MIT License

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• ansible-autoupdates

  Public
  Setup Automatic Update using Dnf-automatic on CentOS 8 systems

  MIT License

  •0•1•0•0•Updated Nov 27, 2024Nov 27, 2024