update requirements

.github/workflows/publish.yml

@@ -7,7 +7,7 @@ on:
 jobs:
   deploy:
 
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
 
     steps:
     - uses: actions/checkout@v3

.github/workflows/pytest.yml

@@ -26,8 +26,9 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install pytest pytest-cov topacedo anndata pcst_fast
         pip install -r requirements.txt
+        pip install -r requirements_extra.txt
+        pip install pytest pytest-cov topacedo anndata pcst_fast
     - name: Test with pytest
       run: |
         pytest --cov=.

scarf/metadata.py

@@ -393,7 +393,7 @@ def insert(
         self,
         column_name: str,
         values: Union[np.ndarray, List],
-        fill_value: Any = np.NaN,
+        fill_value: Any = np.nan,
         key: str = "I",
         overwrite: bool = False,
         location: str = "primary",
@@ -404,7 +404,7 @@ def insert(
         Args:
             column_name (str): Name of column to modify.
             values (np.array): Values the column should contain.
-            fill_value (Any = np.NaN): Value to fill unassigned slots with.
+            fill_value (Any = np.nan): Value to fill unassigned slots with.
             key (str = 'I'):
             overwrite (bool = False): Should function overwrite column if it already exists?
             location (str = 'primary'):