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pathogenwatch-oss

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  1. mlst mlst Public

    The Pathogenwatch MLST/cgMLST assignment tool

    JavaScript 5 1

  2. vista vista Public

    The Pathogenwatch Vibrio cholerae genotyping tool

    Python 5

  3. typing-databases typing-databases Public

    The scripts for creating the typing database used by the MLST code.

    Python 3 1

  4. speciator speciator Public

    Python 3

  5. website website Public

    The main website code for Pathogenwatch

    JavaScript 2

  6. amr-libraries amr-libraries Public

    The CGPS curated AMR libraries used by Pathogenwatch

Repositories

Showing 10 of 21 repositories
  • website Public

    The main website code for Pathogenwatch

    pathogenwatch-oss/website’s past year of commit activity
    JavaScript 2 MIT 0 0 0 Updated Feb 17, 2025
  • tasks Public

    The Pathogenwatch task image build scripts.

    pathogenwatch-oss/tasks’s past year of commit activity
    Python 0 0 0 0 Updated Feb 3, 2025
  • amr-search Public

    The Pathogenwatch AMR genotyping and phenotype inference tool

    pathogenwatch-oss/amr-search’s past year of commit activity
    Java 0 MIT 1 0 0 Updated Jan 17, 2025
  • mlst Public

    The Pathogenwatch MLST/cgMLST assignment tool

    pathogenwatch-oss/mlst’s past year of commit activity
    JavaScript 5 1 1 0 Updated Jan 14, 2025
  • typing-databases Public

    The scripts for creating the typing database used by the MLST code.

    pathogenwatch-oss/typing-databases’s past year of commit activity
    Python 3 1 0 0 Updated Jan 6, 2025
  • cgmlst-clustering Public
    pathogenwatch-oss/cgmlst-clustering’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Nov 26, 2024
  • amr-libraries Public

    The CGPS curated AMR libraries used by Pathogenwatch

    pathogenwatch-oss/amr-libraries’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 12, 2024
  • inctyper Public

    The Pathogenwatch inctyping tool, based on plasmidfinder

    pathogenwatch-oss/inctyper’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 4, 2024
  • kleborate Public

    The Pathogenwatch wrapper for Kleborate

    pathogenwatch-oss/kleborate’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 15, 2024
  • hclink Public

    Link Pathogenwatch cgMLST profile to Enterobase HierCC clusters

    pathogenwatch-oss/hclink’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 19, 2024
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