Examples of JOBS recipes. JOBS is a smart image acquisition engine in NIS-Elements.

Segment images by pixel classification based on pre-trained convolutional layer feature extraction

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

Non-comprehensive list of projects and resources related to open microscopy.

Materials for workshops organised by the Center4ML at the University of Warsaw

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

Sofipackage is a Matlab-based software for super-resolution optical fluctuation imaging (SOFI) analysis.

A tutorial on performing spot detection using napari, scikit-image, and scipy

Constrained Nonnegative Matrix Factorization for microEndoscopic data

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Musical for ImageJ

brain connectivity toolbox for python

Ultra-fast, universal super-resolution radial fluctuations (SRRF) algorithm

Super-resolution radial fluctuations (SRRF)

Hardware documentation for the mesoSPIM microscope project

Respository for Open-Science modular microscope system.

Which ML are you?

Materials for UrbanSensors hackaton http://whyr.pl/hackathon/

Barwny Retrospektywny Analizator Imion Aplikowanych Noworodkom

Presentations from Why R conference

Analiza i wizualizacja danych maturalnych z lat 2010-2014