Here we present all the scripts needed to reproduce the analysis from the paper "Genomic and Phylogenomic analysis of Pseudomonas strains from submarine Kolumbo volcano, Greece" (under preparation).
Scripts presented here run in Bash v.4.4.12 and were prepared to be handled by the SLURM v.16.05.9 manager of the High Perfomance Computer of IMBBC HCMR. Please be warned that in order for these scripts to be used in any other system, significant changes should be applied.
| Bioproject |
|---|
| Accession |
| PRJNA579073 |
| Biosample | Assembly Accession | Organism |
|---|---|---|
| SAMN13075197 | WIGI00000000 | Pseudomonas stutzeri Strain01 |
| SAMN13075198 | WIGH00000000 | Pseudomonas stutzeri Strain02 |
| SAMN13075199 | WIGG00000000 | Pseudomonas stutzeri Strain03 |
| SAMN13075200 | WIGF00000000 | Pseudomonas balerarica Strain04 |
| SAMN13075201 | WIGE00000000 | Pseudomonas aeruginosa Strain05 |
| SAMN13075202 | WIGD00000000 | Pseudomonas aeruginosa Strain06 |
| SAMN13075203 | WIGC00000000 | Pseudomonas aeruginosa Strain07 |
| SAMN13075204 | WIGK00000000 | Pseudomonas xanthomarina Strain08 |
| SAMN13075205 | WIGB00000000 | Pseudomonas stutzeri Strain09 |
| SAMN13075206 | WIGA00000000 | Pseudomonas stutzeri Strain10 |
| SAMN13075207 | WIFZ00000000 | Pseudomonas balearica Strain11 |
| SAMN13075208 | WIFY00000000 | Pseudomonas stutzeri Strain12 |
| SAMN13075209 | WIFX00000000 | Pseudomonas stutzeri Strain13 |
| SAMN13075210 | WIFW00000000 | Pseudomonas stutzeri Strain14 |
| SAMN13075211 | WIFV00000000 | Pseudomonas aeruginosa Strain16 |
| SAMN13075212 | WIFU00000000 | Pseudomonas stutzeri Strain18 |
| SAMN13075213 | WIFT00000000 | Pseudomonas aeruginosa Strain19 |
| SAMN13075214 | WIFS00000000 | Pseudomonas aeruginosa Strain20 |
| SAMN13075215 | WIFR00000000 | Pseudomonas aeruginosa Strain21 |
| SAMN13075216 | WIFQ00000000 | Pseudomonas balearica Strain22 |
| SAMN13075217 | WIFP00000000 | Pseudomonas aeruginosa Strain23 |
| SAMN13075218 | WIGJ00000000 | Pseudomonas stutzeri Strain24 |
| SAMN13075219 | WIFO00000000 | Pseudomonas stutzeri Strain25 |