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Release 1.6.0 #400

Merged
merged 273 commits into from
Dec 22, 2023
Merged

Release 1.6.0 #400

merged 273 commits into from
Dec 22, 2023

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nsheff
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@nsheff nsheff commented Aug 14, 2023 •
edited by donaldcampbelljr
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Major release of looper that adds looper config and finalized pipestat integration, among other things.

TODO:

  • Release and require pipestat v0.6.0
  • Release and require yacman update
  • Update changelog
  • Update documentation

khoroshevskyi and others added 30 commits April 27, 2023 22:59
@khoroshevskyi
added new config docs
ff74cec
@donaldcampbelljr
Remove --toggle key. Add logic during fetch samples for toggle. Remov…
d80d403 
…e checking for toggle off during sample submission (redundant). #263
@donaldcampbelljr
Remove toggle key constants. Apply formatting. #263
4a27fda
@donaldcampbelljr
Remove toggle key property. Simplified logic for fetching samples. #263
fce98e1
@donaldcampbelljr
Merge pull request #374 from pepkit/sub_messages_failures
a5adb8e 
Remove --toggle-key functionality
@khoroshevskyi
fix pephub failing tests
dd83c82
@ayobi
cleaned up more to help pass pytests
8ed3be7
@ayobi
distutils.dir_util for shutil for python 3.12
d6d1b1c
@ayobi
added divvy entry point inside looper
a314305
@ayobi
Merge branch 'dev' into divvy_reintegration
f7bf440
@ayobi
black format
c5b41ea
@ayobi
Merge branch 'divvy_reintegration' of https://github.com/pepkit/looper …
3369248 
…into divvy_reintegration
@ayobi
another black reformat
37e8f30
@khoroshevskyi
added docs
850729c
@ayobi
clean up based on feedback
54e9547
@ayobi
clean up based on feedback
d0b0cff
@ayobi
removed redundancy
a1b38aa
@ayobi
black fmt
2bbc78c
@ayobi
added divvy inspect
5e5288e
@ayobi
black fmt
c436421
@ayobi
added sub cmd, docker args
9781cae
@ayobi
added line break for inspect output
1313907
@ayobi
Merge pull request #378 from pepkit/divvy_reintegration
1bdbb5c 
divvy reintegration
@ayobi
added divvy docs #343
6c664ea
@ayobi
Merge branch 'dev' of https://github.com/pepkit/looper into dev
fefa4bc
@ayobi
added divvy docs #343
517f335
@khoroshevskyi
Merge branch 'dev' into pepehub_connection
187e32d
@ayobi
divvy docs fix
ffe5411
@khoroshevskyi
mkdocs fix
f95b0a6
@khoroshevskyi
Fixed mkdocs error
8b17506
donaldcampbelljr and others added 26 commits November 30, 2023 15:50
@donaldcampbelljr
remove redundant pep_config arg
9577e2b
@donaldcampbelljr
fix bug with path expansion during config read
1e4b1eb
@donaldcampbelljr
pass looper's samples to pipestat summarize
555f30c
@donaldcampbelljr
WIP attempt at selector-flag #126
e89fac2
@donaldcampbelljr
more progress, works for selection #126
6fc3197
@donaldcampbelljr
Add tests, both selection and exclusion based on flags now works #126
3351917
@donaldcampbelljr
fix path issue for items with underscores #126
0112bd1
@donaldcampbelljr
ignore flags if slecting on flags, change sel and exc to have nargs="*"
603b137
@donaldcampbelljr
update docs
e279f71
@donaldcampbelljr
add more tests for selecting attributes in tandem with flags #126
4b30876
@donaldcampbelljr
fix project typo in docs
ca97957
@donaldcampbelljr
Merge pull request #429 from pepkit/dev_126_selectors_on_flags
9af6ebe 
Dev 126 selectors on flags
@donaldcampbelljr
version bump for prerelease 1.6.0a1 and add pipestat req v0.6.0a9
8226249
@donaldcampbelljr
2nd attempt add pipestat req v0.6.0a9
46d7e2b
@donaldcampbelljr
bump to 1.6.0a2
37591f1
@donaldcampbelljr
fixes #430 and adds corresponding tests
77b3115
@khoroshevskyi
Updates for new peppy
5976b07
@khoroshevskyi
lint
c06bb1e
@donaldcampbelljr
basic tab completion for initial commands #422
23e151f
@donaldcampbelljr
polish docs for tab completion #422
35d9f4a
@donaldcampbelljr
lint
b0cc336
@donaldcampbelljr
Merge pull request #431 from pepkit/dev_tab_completion
37dacb0 
tab completion
@donaldcampbelljr
potential fix pepkit/peppy#459
281cef4
@donaldcampbelljr
Revert "potential fix pepkit/peppy#459"
44d0acc 
This reverts commit 281cef4.
@donaldcampbelljr
version 1.6.0a3 pre-release
1fc1f0a
@donaldcampbelljr
v1.6.0 release prep
6ceab3c
@donaldcampbelljr
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Closes https://github.com/pepkit/looper/milestone/10

@donaldcampbelljr donaldcampbelljr merged commit b47a568 into master Dec 22, 2023
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This was referenced Dec 22, 2023
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4 participants
@nsheff @donaldcampbelljr @khoroshevskyi @ayobi