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Looper 2.0.0 Release#509

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donaldcampbelljr wants to merge 56 commits intomasterpepkit/looper:masterfrom devpepkit/looper:devCopy head branch name to clipboard

+1,191-488

Commits

Commits on Jun 25, 2024

• remove checking for config file

  donaldcampbelljr

  committed
  256d585

• Merge branch 'refs/heads/dev' into dev_rename_args_455

  Show description for 848f0ee
  donaldcampbelljr

  committed
  848f0ee

• re-commit no longer checking for subcommand_args.config_file

  donaldcampbelljr

  committed
  7a35c49

• refactor --looper-config to --config

  donaldcampbelljr

  committed
  9c3d9e3

• remove --config-file in favor of using --pep-config

  donaldcampbelljr

  committed
  d8437aa

Commits on Jun 27, 2024

• work towards using consolidated piface, update generic schema

  donaldcampbelljr

  committed
  a62ff35

• pull updated hell_looper dev for #493

  donaldcampbelljr

  committed
  168f012

• fix pipeline_type for pipestat usage with consolidated pipelines, fix remaning tests

  donaldcampbelljr

  committed
  2d2475b

Commits on Jun 28, 2024

• refactor looper init tutorial and add some color to terminal using rich

  donaldcampbelljr

  committed
  eaab8f9

• lint

  donaldcampbelljr

  committed
  db29fd9

• add changes to init_piface, change colors for better contrast

  donaldcampbelljr

  committed
  acc02ab

Commits on Jul 1, 2024

• Update looper/cli_pydantic.py

  Show description for 0ffb634
  

  donaldcampbelljr

  and

  khoroshevskyi

  authored
  0ffb634

• Update looper/cli_pydantic.py

  Show description for f63597c
  

  donaldcampbelljr

  and

  khoroshevskyi

  authored
  f63597c

• simplify selection options

  donaldcampbelljr

  committed
  a24e0e8

• add docstrings

  donaldcampbelljr

  committed
  9d4551e

• fix looper config formatting on write

  donaldcampbelljr

  committed
  cc1b1ad

• Merge pull request #508 from pepkit/dev_looper_init_walkthrough

  Show description for 636d10c
  donaldcampbelljr

  authored
  636d10c

• add PipelineInterfaceConfigError

  donaldcampbelljr

  committed
  0a90e9a

• Merge pull request #507 from pepkit/dev_consolidate_pifaces

  Show description for 923495d
  donaldcampbelljr

  authored
  923495d

• Merge pull request #505 from pepkit/dev_rename_args_455

  Show description for 5ca885c
  donaldcampbelljr

  authored
  5ca885c

• update version and changelog

  donaldcampbelljr

  committed
  09c0665

Commits on Jul 3, 2024

• add ability to init generic piface during config if it does not exist

  donaldcampbelljr

  committed
  c344f92

• add accepting multiple pifaces

  donaldcampbelljr

  committed
  487e833

• allow generating generic pifaces for many pifaces

  donaldcampbelljr

  committed
  e5a8e7f

Commits on Jul 18, 2024

• update req peppy>=0.40.4

  donaldcampbelljr

  committed
  f64a4f0

Commits on Aug 20, 2024

• fix #512

  donaldcampbelljr

  committed
  a264e80

• fix #511

  donaldcampbelljr

  committed
  4c9549b

• add flag to looper init #514

  donaldcampbelljr

  committed
  40c6634

• remove pause, fix registry path warning #514

  donaldcampbelljr

  committed
  f3aa7bf

• remove restarting looper_init, simply show output #514

  donaldcampbelljr

  committed
  f5cd906

Commits on Aug 22, 2024

• fix extra dash when writing .looper.yaml #514

  donaldcampbelljr

  committed
  70dfb23

• add shortform argument for --package

  donaldcampbelljr

  committed
  54682ae

• make compute_packages a property and fix divvy inspect

  donaldcampbelljr

  committed
  fdac0a8

• remove position based argument for divvy config, must use --config or run as default config

  donaldcampbelljr

  committed
  7d457a1

• fix compute key value parsing under cli key in looper config

  donaldcampbelljr

  committed
  7966ec6

• allow compute section under cli key to be a single string for convenience

  donaldcampbelljr

  committed
  907037e

Commits on Aug 23, 2024

• add exception messaging for phc login #516

  donaldcampbelljr

  committed
  08af6cc

• Fix #518

  donaldcampbelljr

  committed
  a01722f

• Add better warnings for missing looper config files #515

  donaldcampbelljr

  committed
  d9ea2ad

• Add missing and malformed piface warning #515

  donaldcampbelljr

  committed
  b29494c

• add clarity if config file cannot be parsed #515

  donaldcampbelljr

  committed
  db8c228

Commits on Aug 26, 2024

• allow calling pephub_path directly from pipestat namespace, version bump pipestat to 0.10.2, Fixes #519

  donaldcampbelljr

  committed
  3a9874e

Commits on Aug 27, 2024

• fix for #511

  donaldcampbelljr

  committed
  ffa812b

• Revert "fix #511"

  Show description for 68a1729
  donaldcampbelljr

  committed
  68a1729

• Revert "add exception messaging for phc login #516"

  Show description for d5fd36a
  donaldcampbelljr

  committed
  d5fd36a

• replace deprecated func

  donaldcampbelljr

  committed
  d0cffcb

Commits on Aug 28, 2024

• Fix divvy, remove requirement for old package, ensure looper is using internal module #520

  donaldcampbelljr

  committed
  165b183

Commits on Sep 10, 2024

• update peppy and eido requirements

  donaldcampbelljr

  committed
  f23f5aa

Commits on Sep 19, 2024

• update the looper init_piface output to no longer use var_templates

  donaldcampbelljr

  committed
  a7246de

Commits on Sep 30, 2024

• update changelog and version for 2.0.0a2 prerelease

  donaldcampbelljr

  committed
  c32c924

• refactor tests for new hello_looper changes

  donaldcampbelljr

  committed
  6a66d31

• pull updated hello_looper readme

  donaldcampbelljr

  committed
  8796646

• Merge pull request #525 from pepkit/dev_refactor_tests_hello_looper

  Show description for 8e48df9
  donaldcampbelljr

  authored
  8e48df9

Commits on Oct 1, 2024

• pull updated hello_looper output schema

  donaldcampbelljr

  committed
  b54e678

Commits on Oct 2, 2024

• pull updated hello_looper output schema (again)

  donaldcampbelljr

  committed
  89cbfc2

Commits on Oct 9, 2024

• use filepath (requires new yacman)

  nsheff

  committed
  e0aaa04