fixed #493

pepkit · Sep 10, 2024 · 03de2d6 · 03de2d6
1 parent 0f28c65
commit 03de2d6
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Showing 3 changed files with 6 additions and 4 deletions.
diff --git a/peppy/_version.py b/peppy/_version.py
@@ -1 +1 @@
-__version__ = "0.40.5"
+__version__ = "0.40.6"
diff --git a/peppy/project.py b/peppy/project.py
@@ -345,8 +345,10 @@ def to_dict(
                 SUBSAMPLE_RAW_LIST_KEY: sub_df,
             }
         else:
-            p_dict = self.config.copy()
-            p_dict["_samples"] = [s.to_dict() for s in self.samples]
+            p_dict = {
+                "project": self.config.copy(),
+                "samples": [s.to_dict() for s in self.samples],
+            }
 
         return p_dict
 

diff --git a/tests/test_Project.py b/tests/test_Project.py
@@ -375,7 +375,7 @@ def test_to_dict_does_not_create_nans(self, example_pep_nextflow_csv_path):
         p1 = Project(
             cfg=example_pep_nextflow_csv_path, sample_table_index="sample"
         ).to_dict()
-        for sample in p1.get("_samples"):
+        for sample in p1.get("samples"):
             for attribute, value in sample.items():
                 assert value not in wrong_values