Skip to content

Issues: perslab/CELLECT

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

31 Open 58 Closed
31 Open 58 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error in rule make_annot
#96 opened Nov 25, 2024 by Antidington
rule compute LD scores: numpy issue when running on a singularity image
#95 opened Aug 30, 2024 by ElizabethWallace97
attributeerror
#92 opened Jul 2, 2024 by inabro
SyntaxError in file, Unexpected keyword temp in rule definition
#91 opened Mar 14, 2024 by LilyAndrews6
GWAS hg38 coordinate
#89 opened Oct 18, 2023 by zhangpicb
1
KeyError: u"None of [Int64Index
#85 opened Sep 5, 2022 by wanghf0501
1
Allowed characters in annotation names/id
#83 opened Jul 10, 2022 by pascaltimshel
@pvtodorov
1
cellect-genes.snakefile error (issue with the cellect_magma subworkflow)
#81 opened Jul 10, 2022 by pascaltimshel
@JonThom
1
Compute Enrichment score enhancement New feature or request
#77 opened Dec 7, 2021 by pascaltimshel
Error in rule compute_LD_scores_all_genes:
#73 opened Sep 7, 2021 by yuGithuuub
3
error using cellex esmu files
#72 opened Jul 12, 2021 by JonnyBaseball
2
Exclude MHC doesn't apply to CELLECT-GENES
#70 opened May 28, 2021 by Tobi1kenobi
Check specificity input for numeric values only check&catch error checks and catching of errors. If very serious issue, report as bug enhancement New feature or request
#65 opened Jan 11, 2021 by pascaltimshel
Error message when a special character is used for a cell-type/annotation check&catch error checks and catching of errors. If very serious issue, report as bug enhancement New feature or request priority_high High priority
#63 opened Oct 12, 2020 by Tobi1kenobi
Update to MAGMA v1.08 (fix type 1 error rates for large genes) priority_high High priority
#61 opened Sep 7, 2020 by pascaltimshel
CELLECT-GENES runs the entire MAGMA subworkflow from scratch every time enhancement New feature or request priority_high High priority
#60 opened Sep 1, 2020 by pascaltimshel
@JonThom
Diagnostics script for GWAS munging / SNP mapping enhancement New feature or request help wanted Extra attention is needed
#56 opened Jun 10, 2020 by pascaltimshel
@pvtodorov
1
Munged sample sizes not equal to input
#55 opened Jun 8, 2020 by rrydbirk
Add option to exclude MHC region for CELLECT-MAGMA issue something's not right and should to be taken care of priority_high High priority
#52 opened May 11, 2020 by pascaltimshel
@liubovpashkova
Check expression specificity annotation names (ES header) check&catch error checks and catching of errors. If very serious issue, report as bug priority_high High priority
#45 opened Mar 4, 2020 by DaianeH
26
System python being called within conda environment bug Something isn't working priority_low Low priority
#44 opened Mar 3, 2020 by Tobi1kenobi
explicit error when CELLEX input does not contain human Ensembl gene IDs check&catch error checks and catching of errors. If very serious issue, report as bug enhancement New feature or request priority_high High priority
#41 opened Feb 24, 2020 by pascaltimshel
Explicit failure when no genes found check&catch error checks and catching of errors. If very serious issue, report as bug enhancement New feature or request
#40 opened Feb 18, 2020 by pvtodorov
conditional analysis does work with multiple expression specificity datasets bug Something isn't working
#34 opened Jan 1, 2020 by pascaltimshel
config file: add support for annotation regex/globbing [annotations: "*"] enhancement New feature or request
#33 opened Nov 24, 2019 by pascaltimshel
2
ProTip! Mix and match filters to narrow down what you’re looking for.