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bamtools sort#7

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+364-195

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Commits on Mar 29, 2011

• Sort Criterias seperated

  

  riedl

  committed
  ee3e101

• modified: api/BamMultiReader.cpp

  Show description for ae24738
  

  riedl

  committed
  ae24738

• Rename ALIGNMENTPOSITION to ALIGNMENTSCORE wihtin SamConstant.h and BamSortOrder.h

  

  riedl

  committed
  68a8086

Commits on Mar 30, 2011

• Segmentation fault solved. Reason: sort needs a StrictWeakOdering (if x==x then false). Therefore one sorting criteria can not be flipped to offer sorting in the other direction

  riedl

  committed
  2cc0629

• Add the signature BamMultiReader::SetSortOrder(const SortOrder& order, const bool& ascending =true) and removing comments

  riedl

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  b9e2878

• Check the SortCriteria for the bamtools_sort given with the -tagname flag

  riedl

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  6587d90

Commits on Mar 31, 2011

• Extract the comparison to single templates and use Less/Greater function of the STL. Correction of using int32_t instead of uint32_t. This spoiled the order in files havin entries without POS/AS

  riedl

  committed
  047a543

• src cleaning

  riedl

  committed
  d766464