Merge pull request #554 from pharmaR/dev

Next release

.Rbuildignore

@@ -21,3 +21,6 @@ _\.new\.png$
 ^_pkgdown\.yml$
 ^pkgdown$
 ^Crashpad$
+^tarballs$
+^source$
+^revdep

.Rprofile

@@ -1 +1,3 @@
 source("renv/activate.R")
+options(renv.config.mran.enabled = FALSE)
+options(renv.config.auto.snapshot = FALSE)

.github/workflows/R-CMD-check-dev.yaml → .github/workflows/R-CMD-check.yaml

@@ -2,9 +2,9 @@
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [dev]
+    branches: [main, master, dev]
   pull_request:
-    branches: [dev]
+    branches: [main, master, dev]
   workflow_dispatch:
 
 name: R-CMD-check
@@ -34,7 +34,7 @@ jobs:
           sudo apt-get install -y libcurl4-openssl-dev
           sudo apt-get install -y libharfbuzz-dev
           sudo apt-get install -y libfribidi-dev
-
+          
       - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
@@ -44,7 +44,7 @@ jobs:
           r-version: 'renv'
           use-public-rspm: true
       - uses: r-lib/actions/setup-renv@v2
-          
+
       - name: Install riskassessment
         shell: bash
         run: R CMD INSTALL --preclean .

.github/workflows/test-coverage.yaml

@@ -14,6 +14,7 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      RENV_CONFIG_SANDBOX_ENABLED: false
 
     steps:
       - uses: actions/checkout@v2

.gitignore

@@ -12,3 +12,5 @@ inst/doc
 auto_decisions.json
 ^docs$
 docs/
+tarballs/
+source/

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: riskassessment
 Title: A web app designed to interface with the `riskmetric` package
-Version: 1.0.0
+Version: 2.0.0
 Authors@R: c( 
     person("Aaron", "Clark", role = c("aut", "cre"), email = "[email protected]"),
     person("Robert", "Krajcik", role = "aut", email = "[email protected]"),
@@ -14,10 +14,11 @@ Authors@R: c(
     person("Aravind Reddy", "Kallem", role = "aut"),
     person(family = "Fission Labs India Pvt Ltd", role = "aut"),
 	  person(family = "PSI special interest group Application and Implementation of Methodologies in Statistics", role = c("cph", "fnd")),
-    person(family = "R Validation Hub", role = c("cph", "fnd"))
+    person(family = "R Validation Hub", role = c("cph", "fnd")),
+    person(family = "GSK contributors", role = "ctb", comment = "Author of 'pharmaR/pkg_explorer' repo")
   )
-Description: The `riskassessment` application allows users to define a list of R
-    packages to assess against metrics engineered by the `riskmetric` package.
+Description: A shiny application that allows users to define a list of R
+    packages to assess metrics engineered by the `riskmetric` package.
     In general, those metrics evaluate package development best practices, code
     documentation, community engagement, and sustainability that culminate in a
     quantitative risk score. The app allows users to select and review one package
@@ -26,7 +27,8 @@ Description: The `riskassessment` application allows users to define a list of R
     calculate the packages' risk scores. When deployed in the context of an
     organization, the app serves as a platform for package validation, offering an
     authentication wall where roles are assigned to various users and 'final
-    decisions' can be made at the package level.
+    decisions' can be made at the package level manually or through pre-defined
+    automation rules.
 License: MIT + file LICENSE
 URL: https://github.com/pharmaR/riskassessment
 BugReports: https://github.com/pharmaR/riskassessment/issues
@@ -40,6 +42,7 @@ Imports:
     colourpicker,
     cranlogs,
     DBI,
+    desc,
     dplyr,
     DT,
     formattable,
@@ -60,13 +63,16 @@ Imports:
     shinyjs,
     shinymanager,
     shinyWidgets,
-    stringr
+    stringr,
+    shinyAce,
+    jsTreeR
 Suggests: 
     chromote,
     fontawesome,
     kableExtra,
     knitr,
     pkgload,
+    rjson,
     rstudioapi,
     shinytest2,
     spelling,

LICENSE

@@ -1,4 +1,210 @@
 YEAR: 2020
 COPYRIGHT HOLDER:
   - PSI special interest group Application and Implementation of Methodologies in Statistics
-  - R Validation Hub
+  - R Validation Hub
+
+The riskassessment package includes other open source software components. The 
+following is a list of these components (full copies of the license agreements 
+used by these components are included below):
+
+- pkg_explorer, https://github.com/pharmaR/pkg_explorer
+
+
+
+pkg_explorer
+----------------------------------------------------------------------
+
+Apache License
+==============
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