Code

0015 derive seq#53

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ramiromagno merged 109 commits intomainpharmaverse/sdtm.oak:mainfrom 0015_derive_seqpharmaverse/sdtm.oak:0015_derive_seqCopy head branch name to clipboardMay 30, 2024

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Commits on Feb 8, 2024

• First mockup of hardcode_no_ct()

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Commits on Feb 17, 2024

• Update hardcode_no_ct()

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Commits on Feb 21, 2024

• Align hardcode_no_ct() code style with Ramm's expectations

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Commits on Feb 22, 2024

• Add hardcode_*() and assign_*() functions

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Commits on Mar 13, 2024

• hardcode_no_ct algorithm code changes (#45)

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Commits on Mar 14, 2024

• Add oak_id_vars()

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• Fix typo in recode()

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• Simplify oak_id_vars() docs

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• Update assign_* and hardcode_* implementations

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• Introduce memoisation of ct_mappings()

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• Update of README introductory paragraph

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• Merge from main

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Commits on Mar 24, 2024

• Update hardcode_* functions' interface

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• Add contains_oak_id_vars() function

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• Update contains_oak_id_vars() doc examples

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• Update sdtm_harcode() and dependant functions

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Commits on Mar 25, 2024

• Update assign_* and hardcore_* related functions

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Commits on Mar 27, 2024

• Make ct and cl parameters mandatory for assign_ct()

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• Add functions ct importing

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• Bring hardcode*() and assign*() related assertions closer to user calling functions

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• Add lagging behind Rd for ct_example()

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• Add assert_ct()

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• Add ct assertions

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• Merge branch '0040_hardcode_no_ct' of github.com:pharmaverse/sdtm.oak into 0040_hardcode_no_ct

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Commits on Apr 1, 2024

• Remove R/.gitkeep

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• Add unit tests for ct_vars()

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• Update dependencies

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• Export ct_vars()

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• Update assert_ct() docs

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• Clarify assign_ct()/assign_no_ct() doc

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• Remove last empty line from ct example file

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• Add documentation to sdtm_assign() and ct-related unit tests

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• Update hardcode-related fns

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• Improve assert_cl() docs

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• Add units tests for recode()

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• Remove are_to_recode() function

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• Add units tests for assert_ct()

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• Add one more test for assert_ct()

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• Add a basic unit test for ct_mappings()

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Commits on Apr 2, 2024

• Fill in some doc details of ct-related functions

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• Remove leftover doc text in assign

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• Fix a few lintr issues

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• Merge branch '0040_hardcode_no_ct' of github.com:pharmaverse/sdtm.oak into 0040_hardcode_no_ct

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• Add examples to ct_map() doc

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• Fix typo in problems() doc

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• Fix typo

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• Initial mockup of assign_datetime()

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Commits on Apr 3, 2024

• Add .warn parameter to create_iso8601() internals

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Commits on Apr 4, 2024

• Variable renaming

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• Finish pending renaming of variables

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• Merge branch '0040_hardcode_no_ct' into 0046_assign_datetime

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• Add assertions to assign_datetime()

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Commits on Apr 10, 2024

• Update ct_map() doc example

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• Make tibbles more readable in doc examples

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• Rename ct_cltc to ct_clst

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• Merge branch '0040_hardcode_no_ct' into 0046_assign_datetime

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• Make tibble more readable in assign_datetime() doc examples

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• Stash changes so far

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• Fix bug in assign_datetime

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Commits on May 14, 2024

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• Fix a few issues in domain_example() docs

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• Comment derive_seq()

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• Update ct_spec_vars() docs' examples

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• Fix typo in assign_datetime() documentation

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• Fix typo in ct_map() docs

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• Merge branch '0046_assign_datetime' into 0015_derive_seq

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• Reformating of docs of derive_seq()

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Commits on May 15, 2024

• First mockup of derive_seq()

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• Simplification of derive_seq() interface

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Commits on May 23, 2024

• Strip down the domain example data sets

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• Remove rec_vars()

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Commits on May 24, 2024

• Fix linting issues

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• Add sbj_vars() to pkgdown reference list

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