NAMESPACE

# Generated by roxygen2: do not edit by hand

export(alignBins)
export(alignBinsMSA)
export(alignBinsMSA_internal)
export(alignBinsSP)
export(alignBinsSP_internal)
export(alignBins_internal)
export(allResults)
export(ambigSeqs)
export(applyOperation)
export(apply_consensus_cutoff)
export(basicQC)
export(binSeqErr)
export(binSizeCheck)
export(blastTrim)
export(buildConfig)
export(buildConfig_nol_test)
export(buildConfig_ol_prod)
export(buildConsensus)
export(build_cutoff_models)
export(computeMetrics)
export(dataTracing)
export(doubleClusterTally)
export(extractData)
export(extractPIDs)
export(genKeptVector)
export(genReport)
export(genSummary)
export(genSummary_case1)
export(genSummary_case3)
export(genSummary_case4)
export(getKept)
export(getTrimmed)
export(get_consensus_cutoff)
export(get_cutoff_models)
export(loadData)
export(make_monotonic)
export(matchPairs)
export(mergePEAR)
export(moving_statistic)
export(mutate_letter)
export(pairwiseMSA)
export(plot_consensus_cutoff_model)
export(plot_consensus_cutoff_sim)
export(prepConfig)
export(primerDimer)
export(primerSeqErr)
export(processBadPIDs)
export(processPrimers)
export(qualTrim)
export(regionSplit)
export(removeChars)
export(saveToDisk)
export(seqLength)
export(shortReadQ_forced_append)
export(sim_all_parents_main_off)
export(sim_one_parent_main_off)
export(sim_wrapper)
export(timingTable)
export(trimAffixes)
export(vsearchCluster)
importFrom(Rcpp,sourceCpp)
useDynLib(MotifBinner2)