Skip to content

Commit

Permalink
Florilege project added
Browse files Browse the repository at this point in the history
  • Loading branch information
BrapiCoordinatorSelby committed Mar 28, 2024
1 parent 7d1a9f7 commit 14e883d
Show file tree
Hide file tree
Showing 20 changed files with 3,864 additions and 29 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
# Output directory containing the formatted manuscript

The [`gh-pages`](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/gh-pages) branch hosts the contents of this directory at <https://plantbreeding.github.io/BrAPI-Manuscript2/>.
The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/f4c8250fee19bd2d31e553bf1da86165440d5cfc/>.
The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/914fa34139922e83b83b010258a31f9dbb24bb40/>.
To redirect to the permalink for the latest manuscript version at anytime, use the link <https://plantbreeding.github.io/BrAPI-Manuscript2/v/freeze/>.

## Files
Expand Down Expand Up @@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
## Source

The manuscripts in this directory were built from
[`f4c8250fee19bd2d31e553bf1da86165440d5cfc`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/f4c8250fee19bd2d31e553bf1da86165440d5cfc).
[`914fa34139922e83b83b010258a31f9dbb24bb40`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/914fa34139922e83b83b010258a31f9dbb24bb40).
28 changes: 16 additions & 12 deletions index.html
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@
<meta name="author" content="Francisco López" />
<meta name="author" content="Marco Marsella" />
<meta name="author" content="Matthias Lange" />
<meta name="dcterms.date" content="2024-03-15" />
<meta name="dcterms.date" content="2024-03-28" />
<meta name="keywords" content="brapi, breeding, api, standards, community" />
<title>BrAPI Success Stories</title>
<style>
Expand Down Expand Up @@ -67,11 +67,11 @@
<meta name="citation_title" content="BrAPI Success Stories" />
<meta property="og:title" content="BrAPI Success Stories" />
<meta property="twitter:title" content="BrAPI Success Stories" />
<meta name="dc.date" content="2024-03-15" />
<meta name="citation_publication_date" content="2024-03-15" />
<meta property="article:published_time" content="2024-03-15" />
<meta name="dc.modified" content="2024-03-15T11:51:54+00:00" />
<meta property="article:modified_time" content="2024-03-15T11:51:54+00:00" />
<meta name="dc.date" content="2024-03-28" />
<meta name="citation_publication_date" content="2024-03-28" />
<meta property="article:published_time" content="2024-03-28" />
<meta name="dc.modified" content="2024-03-28T17:23:23+00:00" />
<meta property="article:modified_time" content="2024-03-28T17:23:23+00:00" />
<meta name="dc.language" content="en-US" />
<meta name="citation_language" content="en-US" />
<meta name="dc.relation.ispartof" content="Manubot" />
Expand Down Expand Up @@ -135,9 +135,9 @@
<meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
<meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
<link rel="alternate" type="application/pdf" href="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
<link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f4c8250fee19bd2d31e553bf1da86165440d5cfc/" />
<meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f4c8250fee19bd2d31e553bf1da86165440d5cfc/" />
<meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f4c8250fee19bd2d31e553bf1da86165440d5cfc/manuscript.pdf" />
<link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/914fa34139922e83b83b010258a31f9dbb24bb40/" />
<meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/914fa34139922e83b83b010258a31f9dbb24bb40/" />
<meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/914fa34139922e83b83b010258a31f9dbb24bb40/manuscript.pdf" />
<meta property="og:type" content="article" />
<meta property="twitter:card" content="summary_large_image" />
<link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
Expand All @@ -154,10 +154,10 @@ <h1 class="title">BrAPI Success Stories</h1>
</header>
<p><small><em>
This manuscript
(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/f4c8250fee19bd2d31e553bf1da86165440d5cfc/">permalink</a>)
(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/914fa34139922e83b83b010258a31f9dbb24bb40/">permalink</a>)
was automatically generated
from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/f4c8250fee19bd2d31e553bf1da86165440d5cfc">plantbreeding/BrAPI-Manuscript2@f4c8250</a>
on March 15, 2024.
from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/914fa34139922e83b83b010258a31f9dbb24bb40">plantbreeding/BrAPI-Manuscript2@914fa34</a>
on March 28, 2024.
</em></small></p>
<h2 id="authors">Authors</h2>
<ul>
Expand Down Expand Up @@ -542,6 +542,10 @@ <h4 id="glis">GLIS</h4>
<p>The Global Information System (GLIS) on Plant Genetic Resources for Food and Agriculture (PGRFA) of the International Treaty on Plant Genetic Resources for Food and Agriculture (ITPGRFA) is a web-based global entry point for users and third-party systems to access information and knowledge on scientific, technical and environmental matters to strengthen PGRFA conservation, management and utilization activities. The system and its portal also enable recipients of PGRFA to make available all non-confidential information on germplasm according to the provisions of the Treaty and facilitates access to the results of their research and development.</p>
<p>Thanks to the adoption of Digital Object Identifiers (DOIs) to PGRFA ex situ and in situ based on the Multi-Crop Passport Descriptors (MCPD), the Portal provides access to 1,7 million PGRFA in collections conserved worldwide. Of these, over 1.5 million are accessible for research, training and plant breeding in the food and agriculture domain.</p>
<p>The Scientific Advisory Committee of the International Treaty and the Governing Body have repeatedly welcomed efforts on interoperability among germplasm information systems. In this context, the GLIS Portal adopted the Breeding API (BrAPI v1) in 2022. Integrating the BrAPI among the GLIS content negotiators facilitates queries and the exchange of content for data management in plant breeding. The Portal also offers other protocols (XML, DarwinCore, JSON and JSON-LD) to increase data and metadata connectivity.In the near future, depending on the availability of resources, upgrading to BrAPI v2 is planned.</p>
<h4 id="florilège-gateway-to-french-plant-genetic-resources">FLORILÈGE (Gateway to French Plant Genetic Resources)</h4>
<p>Designed primarily for the general public, Florilège provides access to all French plant biological resources centers. Its interface allows individuals to browse available plant accessions and gives them the possibility to order them. The listed accessions originate from 19 resources centers and concern around fifty plant species.</p>
<p>Florilège retrieves accession information from different BrAPI-compliant systems such as OLGA, an internal accessions management system, or FAIDARE. Leveraging the BrAPI implementation of these systems ensures standardized data retrieval from multiple sources, making the integration of new data sources that implement BrAPI an effortless process. The implementation of BrAPI is a prerequisite for the integration of any new database in Florilège.</p>
<p>Florilège is developed in Drupal 10, and uses xnttbrapi module (to easily connect to BrAPI compliant external databases).</p>
<h2 id="discussion">Discussion</h2>
<!-- * how can BrAPI help breeders (specifically small breeders)
* Looking ahead - what needs to be done further
Expand Down
Binary file modified manuscript.pdf
Binary file not shown.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions v/914fa34139922e83b83b010258a31f9dbb24bb40/images/github.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions v/914fa34139922e83b83b010258a31f9dbb24bb40/images/orcid.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions v/914fa34139922e83b83b010258a31f9dbb24bb40/images/twitter.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading

0 comments on commit 14e883d

Please sign in to comment.