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31 changes: 19 additions & 12 deletions manuscript.html
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<meta name="author" content="Sebastian “Baz” Raubach" />
<meta name="author" content="Iain Milne" />
<meta name="author" content="Becky Smith" />
<meta name="dcterms.date" content="2023-10-06" />
<meta name="dcterms.date" content="2023-10-13" />
<meta name="keywords" content="brapi, breeding, api, standards, community" />
<title>BrAPI Success Stories</title>
<style>
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<meta name="citation_title" content="BrAPI Success Stories" />
<meta property="og:title" content="BrAPI Success Stories" />
<meta property="twitter:title" content="BrAPI Success Stories" />
<meta name="dc.date" content="2023-10-06" />
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<meta name="dc.relation.ispartof" content="Manubot" />
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<meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
<meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
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Expand All @@ -105,10 +105,10 @@ <h1 class="title">BrAPI Success Stories</h1>
</header>
<p><small><em>
This manuscript
(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/599b7a809e30317a447b3b6ccb8cde8b0959acce/">permalink</a>)
(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/8c3c2d6e76368252c80d66eb19960a1b07ea9023/">permalink</a>)
was automatically generated
from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/599b7a809e30317a447b3b6ccb8cde8b0959acce">plantbreeding/BrAPI-Manuscript2@599b7a8</a>
on October 6, 2023.
from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/8c3c2d6e76368252c80d66eb19960a1b07ea9023">plantbreeding/BrAPI-Manuscript2@8c3c2d6</a>
on October 13, 2023.
</em></small></p>
<h2 id="authors">Authors</h2>
<ul>
Expand Down Expand Up @@ -229,6 +229,13 @@ <h3 id="data-management-deltabreed-bms-breedbase-bims-germinate-phis-etc">Data M
<li>Alternate solutions/ why is it better with BrAPI</li>
<li>future related use cases, areas to improve</li>
</ul>
<h3 id="federated-data-management-infrastructures-agent-increasing-eurisco-dataplant-nfdi4biodiversity-fairagro">Federated Data Management Infrastructures (AGENT, INCREASING, EURISCO, DataPLANT, NFDI4BioDiversity, FAIRAgro)</h3>
<ul>
<li>General use case description(s) - AgrosystemIntegration of germplasm collections in context of data trustee models among private economy and public research, integration of ex-situ genbanks (EU H2020 projects AGENT, INCREASING), integrated agrosystems and plant research infrastructure)</li>
<li>Specific tool examples - BraPI endponts for AGENT, IPK-Genbank, MIAPPE ISA-TAB2BRAPI service</li>
<li>Alternate solutions/ why is it better with BrAPI - Schema.ORG lightweight meta data harvesting, ARCs as collaborative data decoration, API and publication pipeline</li>
<li>future related use cases, areas to improve - LIMS to BrAPI proxies</li>
</ul>
<h3 id="data-visualization-flapjack-helium-tassel-etc">Data visualization (Flapjack, Helium, Tassel, etc)</h3>
<ul>
<li>General use case description(s)</li>
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30 changes: 18 additions & 12 deletions manuscript.md
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Expand Up @@ -7,7 +7,7 @@ keywords:
- standards
- community
lang: en-US
date-meta: '2023-10-06'
date-meta: '2023-10-13'
author-meta:
- Peter "BrapMan" Selby
- Trevor "Cool Kid" Rife
Expand All @@ -25,11 +25,11 @@ header-includes: |
<meta name="citation_title" content="BrAPI Success Stories" />
<meta property="og:title" content="BrAPI Success Stories" />
<meta property="twitter:title" content="BrAPI Success Stories" />
<meta name="dc.date" content="2023-10-06" />
<meta name="citation_publication_date" content="2023-10-06" />
<meta property="article:published_time" content="2023-10-06" />
<meta name="dc.modified" content="2023-10-06T17:08:17+00:00" />
<meta property="article:modified_time" content="2023-10-06T17:08:17+00:00" />
<meta name="dc.date" content="2023-10-13" />
<meta name="citation_publication_date" content="2023-10-13" />
<meta property="article:published_time" content="2023-10-13" />
<meta name="dc.modified" content="2023-10-13T08:31:18+00:00" />
<meta property="article:modified_time" content="2023-10-13T08:31:18+00:00" />
<meta name="dc.language" content="en-US" />
<meta name="citation_language" content="en-US" />
<meta name="dc.relation.ispartof" content="Manubot" />
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<meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
<meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
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<link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/599b7a809e30317a447b3b6ccb8cde8b0959acce/" />
<meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/599b7a809e30317a447b3b6ccb8cde8b0959acce/" />
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<link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/8c3c2d6e76368252c80d66eb19960a1b07ea9023/" />
<meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/8c3c2d6e76368252c80d66eb19960a1b07ea9023/" />
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Expand All @@ -81,10 +81,10 @@ manubot-clear-requests-cache: false

<small><em>
This manuscript
([permalink](https://plantbreeding.github.io/BrAPI-Manuscript2/v/599b7a809e30317a447b3b6ccb8cde8b0959acce/))
([permalink](https://plantbreeding.github.io/BrAPI-Manuscript2/v/8c3c2d6e76368252c80d66eb19960a1b07ea9023/))
was automatically generated
from [plantbreeding/BrAPI-Manuscript2@599b7a8](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/599b7a809e30317a447b3b6ccb8cde8b0959acce)
on October 6, 2023.
from [plantbreeding/BrAPI-Manuscript2@8c3c2d6](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/8c3c2d6e76368252c80d66eb19960a1b07ea9023)
on October 13, 2023.
</em></small>


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* Alternate solutions/ why is it better with BrAPI
* future related use cases, areas to improve

### Federated Data Management Infrastructures (AGENT, INCREASING, EURISCO, DataPLANT, NFDI4BioDiversity, FAIRAgro)
* General use case description(s) - AgrosystemIntegration of germplasm collections in context of data trustee models among private economy and public research, integration of ex-situ genbanks (EU H2020 projects AGENT, INCREASING), integrated agrosystems and plant research infrastructure)
* Specific tool examples - BraPI endponts for AGENT, IPK-Genbank, MIAPPE ISA-TAB2BRAPI service
* Alternate solutions/ why is it better with BrAPI - Schema.ORG lightweight meta data harvesting, ARCs as collaborative data decoration, API and publication pipeline
* future related use cases, areas to improve - LIMS to BrAPI proxies

### Data visualization (Flapjack, Helium, Tassel, etc)

* General use case description(s)
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45 changes: 31 additions & 14 deletions spelling-error-locations.txt
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Expand Up @@ -70,21 +70,38 @@ content/03.success.md:12:BMS
content/03.success.md:12:Breedbase
content/03.success.md:12:DeltaBreed
content/03.success.md:16:BrAPI
content/03.success.md:19:DataPLANT
content/03.success.md:19:EURISCO
content/03.success.md:19:FAIRAgro
content/03.success.md:20:AgrosystemIntegration
content/03.success.md:20:agrosystems
content/03.success.md:20:genbanks
content/03.success.md:20:germplasm
content/03.success.md:20:situ
content/03.success.md:21:BraPI
content/03.success.md:21:endponts
content/03.success.md:21:Genbank
content/03.success.md:21:IPK
content/03.success.md:21:ISA
content/03.success.md:21:MIAPPE
content/03.success.md:22:BrAPI
content/03.success.md:23:BrAPI
content/03.success.md:26:Analytics
content/03.success.md:26:QBMS
content/03.success.md:30:BrAPI
content/03.success.md:33:brapi
content/03.success.md:33:brapi
content/03.success.md:37:BrAPI
content/03.success.md:40:DBs
content/03.success.md:40:Genotype
content/03.success.md:40:GIGWA
content/03.success.md:40:MGIS
content/03.success.md:44:BrAPI
content/03.success.md:47:FAIDARE
content/03.success.md:47:Phenospex
content/03.success.md:51:BrAPI
content/03.success.md:23:LIMS
content/03.success.md:29:BrAPI
content/03.success.md:32:Analytics
content/03.success.md:32:QBMS
content/03.success.md:36:BrAPI
content/03.success.md:39:brapi
content/03.success.md:39:brapi
content/03.success.md:43:BrAPI
content/03.success.md:46:DBs
content/03.success.md:46:Genotype
content/03.success.md:46:GIGWA
content/03.success.md:46:MGIS
content/03.success.md:50:BrAPI
content/03.success.md:53:FAIDARE
content/03.success.md:53:Phenospex
content/03.success.md:57:BrAPI
content/04.discussion.md:3:BrAPI
content/04.discussion.md:5:Analytics
content/04.discussion.md:11:BrAPI
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18 changes: 16 additions & 2 deletions spelling-errors.txt
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@@ -1,9 +1,11 @@
AgrosystemIntegration
agrosystems
Analytics
Batbaby
Baz
BIMS
BMS
brapi
BrAPI
BrapiCoordinatorSelby
BrapMan
BrAPPs
Expand All @@ -12,24 +14,35 @@ Breedbase
CLI
Climmob
COVID
DataPLANT
datasets
DBs
DeltaBreed
DSFAS
endponts
ERD
EURISCO
FAIDARE
FAIRAgro
focussing
Genbank
genbanks
Genotype
Genotyping
Germplasm
GIGWA
hackathon
hackathons
Hackathons
Iain
imilne
interoperable
IPK
ISA
JSON
LIMS
MGIS
MIAPPE
NFDI
NIFA
Phenoapps
Phenospex
Expand All @@ -38,4 +51,5 @@ programmatically
QBMS
Raubach
Selby
situ
trife
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