Skip to content

Commit

Permalink
Merge pull request #20 from bedroesb/brapi2isa
Browse files Browse the repository at this point in the history
Add text for the BrAPI2ISA section + new author
  • Loading branch information
BrapiCoordinatorSelby authored Apr 4, 2024
2 parents 505e375 + 547f6fa commit 68e56bc
Show file tree
Hide file tree
Showing 2 changed files with 10 additions and 3 deletions.
4 changes: 2 additions & 2 deletions content/03.03.federation-infrastructure.md
Original file line number Diff line number Diff line change
Expand Up @@ -19,5 +19,5 @@ Agrosystem Integration of germplasm collections in context of data trustee model

#### MIAPPE "BrAPI to ISA" service

<!-- Peter S: Stub paragraph to stimulate the writing process. Please edit, rewrite, or delete as needed. -->
MIAPPE and BrAPI are designed to be inter-compatible. ISA-TAB is a file based implementation of MIAPPE. The "BrAPI to ISA" service is a converter between the ISA-TAB files and the BrAPI RESTful endpoints.

Since the release of BrAPI 1.3, efforts have been made to incorporate support for the Minimum Information About Plant Phenotyping Experiments (MIAPPE) standard into the specification [@doi:10.1111/nph.16544]. This integration was finalized in BrAPI 2.0, resulting in full compatibility between the two standards. Consequently, BrAPI now encompasses all attributes necessary for MIAPPE compliance, adhering to standardized descriptions in accordance with MIAPPE guidelines. Leveraging BrAPI as a standardized RESTful web service API specification, we employ the ISA standard for storing metadata and phenotyping data in a standardized manner. This data is structured in the ISA-TAB file format and subjected to validation using the [MIAPPE ISA configuration](https://github.com/ELIXIR-Belgium/isatab-validation). The "BrAPI to ISA" service functions as a converter between BrAPI RESTful endpoints and ISA-TAB, facilitating the archiving of metadata and data and thereby enhancing data preservation and accessibility. The [BrAPI2ISA](https://github.com/elixir-europe/plant-brapi-to-isa) tool is designed to be compatible with BrAPI 1.3, and we invite contributions from the community to extend support for the latest versions of BrAPI.
9 changes: 8 additions & 1 deletion content/metadata.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -154,4 +154,11 @@ authors:
affiliations:
- Leibniz Institute of Plant Genetics and Crop Plant Research
corresponding: false

- name: Bert Droesbeke
initials: BD
github: bedroesb
orcid: 0000-0003-0522-5674
email: [email protected]
affiliations:
- VIB Data Core
corresponding: false

0 comments on commit 68e56bc

Please sign in to comment.