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GLIS paragraph
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BrapiCoordinatorSelby committed Mar 7, 2024
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4 changes: 2 additions & 2 deletions content/03.05.analytics.md
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Expand Up @@ -23,5 +23,5 @@ Mr. Bean is an analytics and visualization tool. Mr. Bean has a data import tool

#### G-Crunch

<!-- Peter S: Stub paragraph to stimulate the writing process. Please edit, rewrite, or delete as needed. -->
G-Crunch is a new general analysis pipeline tool, meant for automated, production level, analysis tasks. Part of that automation relies on BrAPI to access data.
G-Crunch is an upcoming user-facing analysis tool that attempts to fill the space of simple, user driven analytics requests, with a generic user interface and the ability to swap out data sources and analysis tools. G-Crunch hopes to streamline repeatable, debuggable simple analytic requests and results.
G-Crunch, as a tool, couldn't feasibly exist without BrAPI. The support of BrAPI interfaces allows G-Crunch to use one unified request method, and adapt to the user's (BrAPI-compliant) existing network of tools, which lowers the barrier to entry for adoption.
7 changes: 5 additions & 2 deletions content/03.07.data-portals.md
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Expand Up @@ -21,5 +21,8 @@ HortControl, developed by Phenospex, is a data repository. HortControl has a BrA

#### GLIS

<!-- Peter S: Stub paragraph to stimulate the writing process. Please edit, rewrite, or delete as needed. -->
GLIS is a service for creating DOIs for agricultural purposes. It also holds basic germplasm information about each accession when a DOI is created for one. GLIS is BrAPI compatible, allowing external searches on the large GLIS database.
The Global Information System (GLIS) on Plant Genetic Resources for Food and Agriculture (PGRFA) of the International Treaty on Plant Genetic Resources for Food and Agriculture (ITPGRFA) is a web-based global entry point for users and third-party systems to access information and knowledge on scientific, technical and environmental matters to strengthen PGRFA conservation, management and utilization activities. The system and its portal also enable recipients of PGRFA to make available all non-confidential information on germplasm according to the provisions of the Treaty and facilitates access to the results of their research and development.

Thanks to the adoption of Digital Object Identifiers (DOIs) to PGRFA ex situ and in situ based on the Multi-Crop Passport Descriptors (MCPD), the Portal provides access to 1,7 million PGRFA in collections conserved worldwide. Of these, over 1.5 million are accessible for research, training and plant breeding in the food and agriculture domain.

The Scientific Advisory Committee of the International Treaty and the Governing Body have repeatedly welcomed efforts on interoperability among germplasm information systems. In this context, the GLIS Portal adopted the Breeding API (BrAPI v1) in 2022. Integrating the BrAPI among the GLIS content negotiators facilitates queries and the exchange of content for data management in plant breeding. The Portal also offers other protocols (XML, DarwinCore, JSON and JSON-LD) to increase data and metadata connectivity.In the near future, depending on the availability of resources, upgrading to BrAPI v2 is planned.
31 changes: 20 additions & 11 deletions content/metadata.yaml
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Expand Up @@ -26,15 +26,13 @@ authors:
email: [email protected]
affiliations:
- Clemson University
funders: []
corresponding: false
- name: Khaled Al-Shamaa
initials: KA
github: khaled-alshamaa
email: [email protected]
affiliations:
- ICARDA
funders: []
corresponding: false
- name: Isabelle Alic
initials: IA
Expand All @@ -54,7 +52,6 @@ authors:
email: [email protected]
affiliations:
- The James Hutton Institute
funders: []
corresponding: false
- name: Paul Shaw
initials: PDS
Expand All @@ -63,7 +60,6 @@ authors:
email: [email protected]
affiliations:
- The James Hutton Institute
funders: []
corresponding: false
- name: Iain Milne
initials: IM
Expand All @@ -72,7 +68,6 @@ authors:
email: [email protected]
affiliations:
- The James Hutton Institute
funders: []
corresponding: false
- name: Cyril Pommier
initials: CP
Expand All @@ -93,15 +88,13 @@ authors:
email: [email protected]
affiliations:
- The James Hutton Institute
funders: []
corresponding: false
- name: Chaney Courtney
github: chaneylc
initials: CC
email: [email protected]
affiliations:
- Clemson University
funders: []
corresponding: false
- name: Zachary Miller
initials: ZM
Expand All @@ -110,7 +103,6 @@ authors:
orcid: 0000-0002-5454-4527
affiliations:
- Cornell University
funders: []
corresponding: false
- name: Terry Casstevens
initials: TC
Expand All @@ -119,15 +111,13 @@ authors:
orcid: 0000-0001-7602-0487
affiliations:
- Cornell University
funders: []
corresponding: false
- name: Sook Jung
initials: SJ
email: [email protected]
orcid: 0000-0003-3968-2769
affiliations:
- Department of Horticulture, Washington State University
funders: []
corresponding: false
- name: Taein Lee
initials: TL
Expand All @@ -136,7 +126,26 @@ authors:
orcid: 0000-0002-2000-2586
affiliations:
- Department of Horticulture, Washington State University
funders: []
corresponding: false
- name: Josh "Big Data" Lamos-Sweeney
initials: JDLS
github: jlamossweeney
email: [email protected]
affiliations:
- Cornell University
corresponding: false
- name: Francisco López
initials: FL
email: [email protected]
affiliations:
- International Treaty on Plant Genetic Resources for Food and Agriculture, FAO
corresponding: false
- name: Marco Marsella
initials: MM
email: [email protected]
orcid: 0000-0003-0334-8785
affiliations:
- International Treaty on Plant Genetic Resources for Food and Agriculture, FAO
corresponding: false


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