DeltaBreed small updates

[ci skip]

This build is based on
859cbdb.

This commit was created by the following CI build and job:
https://github.com/plantbreeding/BrAPI-Manuscript2/commit/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7/checks
https://github.com/plantbreeding/BrAPI-Manuscript2/actions/runs/10427301864

README.md

@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/gh-pages) branch hosts the contents of this directory at <https://plantbreeding.github.io/BrAPI-Manuscript2/>.
-The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/8609ef849b6801b17c55efffc7885e50849e0315/>.
+The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://plantbreeding.github.io/BrAPI-Manuscript2/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`8609ef849b6801b17c55efffc7885e50849e0315`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/8609ef849b6801b17c55efffc7885e50849e0315).
+[`859cbdb7358f52659c3a5a98c9b0411b7fcec5f7`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7).

index.html

@@ -129,8 +129,8 @@
   <meta name="dc.date" content="2024-08-16" />
   <meta name="citation_publication_date" content="2024-08-16" />
   <meta property="article:published_time" content="2024-08-16" />
-  <meta name="dc.modified" content="2024-08-16T22:34:23+00:00" />
-  <meta property="article:modified_time" content="2024-08-16T22:34:23+00:00" />
+  <meta name="dc.modified" content="2024-08-16T23:02:39+00:00" />
+  <meta property="article:modified_time" content="2024-08-16T23:02:39+00:00" />
   <meta name="dc.language" content="en-US" />
   <meta name="citation_language" content="en-US" />
   <meta name="dc.relation.ispartof" content="Manubot" />
@@ -368,9 +368,9 @@
   <meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
   <meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/8609ef849b6801b17c55efffc7885e50849e0315/" />
-  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/8609ef849b6801b17c55efffc7885e50849e0315/" />
-  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/8609ef849b6801b17c55efffc7885e50849e0315/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7/" />
+  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7/" />
+  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
@@ -387,9 +387,9 @@ <h1 class="title">BrAPI Success Stories</h1>
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/8609ef849b6801b17c55efffc7885e50849e0315/">permalink</a>)
+(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/8609ef849b6801b17c55efffc7885e50849e0315">plantbreeding/BrAPI-Manuscript2@8609ef8</a>
+from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/859cbdb7358f52659c3a5a98c9b0411b7fcec5f7">plantbreeding/BrAPI-Manuscript2@859cbdb</a>
 on August 16, 2024.
 </em></small></p>
 <h2 id="authors">Authors</h2>
@@ -1116,8 +1116,8 @@ <h2 id="results">Results</h2>
 <p>Below are a number of short success stories from the BrAPI community. These tools, applications, and infrastructure projects serve as another indicator of community growth and success over the past 5 years. These stories clearly illustrate all the different ways the BrAPI standard can be used productively and in practice. Figure <a href="#fig:apps">2</a> contains a summary of many of the currently available BrAPI-compliant tools, and each will be further described below.</p>
 <div id="fig:apps" class="fignos">
 <figure>
-<img src="images/BrAPI_Paper_Applications_Chart.png" style="width:100.0%" alt="Figure 2: A summary of all the tools described below and the general areas each tool is designed to handle" />
-<figcaption aria-hidden="true"><span>Figure 2:</span> A summary of all the tools described below and the general areas each tool is designed to handle</figcaption>
+<img src="images/BrAPI_Paper_Applications_Chart.png" style="width:100.0%" alt="Figure 2: A summary of all the tools described below and the general areas each tool is designed to handle. The “Generation/Collection” column indicates that an application is used to input or create new data. The “Storage” column indicates the tool stores that type of data. The “Visualization” column indicates that application has a way of presenting data to a human user. The “Analysis” column indicates the tool does some calculation to provide new insight." />
+<figcaption aria-hidden="true"><span>Figure 2:</span> A summary of all the tools described below and the general areas each tool is designed to handle. The “Generation/Collection” column indicates that an application is used to input or create new data. The “Storage” column indicates the tool stores that type of data. The “Visualization” column indicates that application has a way of presenting data to a human user. The “Analysis” column indicates the tool does some calculation to provide new insight.</figcaption>
 </figure>
 </div>
 <!-- NOTES TO UPDATE THE  BrAPI_Paper_Applications_Chart.png :