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BrapiCoordinatorSelby committed Feb 29, 2024
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3 changes: 1 addition & 2 deletions content/03.02.data-management.md
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Expand Up @@ -58,8 +58,7 @@ Since the inception of BrAPI in 2014, the Breedbase group has been a heavy contr

#### BIMS

<!-- Peter S: Stub paragraph to stimulate the writing process. Please edit, rewrite, or delete as needed. -->
BIMS is relatively new to the BrAPI community, with their primary focus being a link to the Field Book mobile data collection app.
BIMS (Breeding Information Management System) [https://doi.org/10.1093/database/baab054] is a free, secure, and online breeding management system which allows breeders to store, manage, archive, and analyze their private breeding program data. BIMS enables individual breeders to have complete control of their own breeding data along with access to tools such as data import/export, data analysis and data archiving for their germplasm, phenotype, genotype, and image data. BIMS is currently implemented in five community databases, the Genome Database for Rosaceae [https://doi.org/10.1093/nar/gky1000], CottonGEN [https://doi.org/10.3390/plants10122805], the Citrus Genome Database, the Pulse Crop Database, and the Genome Database for Vaccinium, as well as a crop-independent website, <https://breedwithbims.org>. BIMS in these five community databases enables individual breeders to import publicly available data so that they can utilize public data in their breeding program. BIMS utilizes the Android App Field Book, enabling seamless data transfer between BIMS and the Field Book App through either files or BrAPI. Data transfer through BrAPI between BIMS and other resources such as BreedBase, GIGWA, and Breeder Genomics Hub is also on the way.

#### Germinate

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72 changes: 54 additions & 18 deletions content/metadata.yaml
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Expand Up @@ -9,63 +9,63 @@ keywords:
- community
lang: en-US
authors:
- github: BrapiCoordinatorSelby
name: Peter "BrapMan" Selby
- name: Peter "BrapMan" Selby
initials: PS
github: BrapiCoordinatorSelby
orcid: 0000-0001-7151-4445
email: [email protected]
affiliations:
- Cornell University
funders:
- NIFA-DSFAS 2022-67021-37024
corresponding: true
- github: trife
name: Trevor "Cool Kid" Rife
- name: Trevor "Cool Kid" Rife
initials: TR
github: trife
orcid: 0000-0002-5974-6523
email: [email protected]
affiliations:
- Clemson University
funders: []
corresponding: false
- github: khaled-alshamaa
name: Khaled Al-Shamaa
- name: Khaled Al-Shamaa
initials: KA
github: khaled-alshamaa
email: [email protected]
affiliations:
- ICARDA
funders: []
corresponding: false
- github: Isabelle-inrae
name: Isabelle Alic
- name: Isabelle Alic
initials: IA
github: Isabelle-inrae
orcid: 0000-0002-8961-6068
email: [email protected]
affiliations:
- INRAE
funders: []
corresponding: false
- github: sebastian-raubach
name: Sebastian "Baz" Raubach
- name: Sebastian "Baz" Raubach
initials: SR
github: sebastian-raubach
orcid: 0000-0001-5659-247X
email: [email protected]
affiliations:
- The James Hutton Institute
funders: []
corresponding: false
- github: imilne
name: Iain Milne
- name: Iain Milne
initials: IM
github: imilne
orcid: 0000-0002-4126-0859
email: [email protected]
affiliations:
- The James Hutton Institute
funders: []
corresponding: false
- github: cpommier
name: Cyril Pommier
- name: Cyril Pommier
initials: CP
github: cpommier
orcid: 0000-0002-9040-8733
email: [email protected]
affiliations:
Expand All @@ -74,21 +74,57 @@ authors:
funders:
- French Infrastructure en Biologie Santé ‘Phenome-FPPN’ supported by the French National Research Agency (ANR-11-INBS-0012)
corresponding: false
- github: Batbaby91
name: Becky Smith
- name: Becky Smith
initials: BS
github: Batbaby91
orcid: 0000-0002-8968-3383
email: [email protected]
affiliations:
- The James Hutton Institute
funders: []
corresponding: false
- github: chaneylc
name: Chaney Courtney
- name: Chaney Courtney
github: chaneylc
initials: CC
email: [email protected]
affiliations:
- Clemson University
funders: []
corresponding: false
- name: Zachary Miller
initials: ZM
email: [email protected]
github: zrm22
orcid: 0000-0002-5454-4527
affiliations:
- Cornell University
funders: []
corresponding: false
- name: Terry Casstevens
initials: TC
email: [email protected]
github: tcasstevens
orcid: 0000-0001-7602-0487
affiliations:
- Cornell University
funders: []
corresponding: false
- name: Sook Jung
initials: SJ
email: [email protected]
orcid: 0000-0003-3968-2769
affiliations:
- Department of Horticulture, Washington State University
funders: []
corresponding: false
- name: Taein Lee
initials: TL
email: [email protected]
github: leetaei
orcid: 0000-0002-2000-2586
affiliations:
- Department of Horticulture, Washington State University
funders: []
corresponding: false


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