minor updates and G-Crunch re-org

[ci skip] This build is based on cd105a0. This commit was created by the following CI build and job: https://github.com/plantbreeding/BrAPI-Manuscript2/commit/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/checks https://github.com/plantbreeding/BrAPI-Manuscript2/actions/runs/10202371722
plantbreeding · Aug 1, 2024 · 8d3d464 · 8d3d464
1 parent cc37398
commit 8d3d464
Show file tree

Hide file tree

Showing 29 changed files with 5,112 additions and 219 deletions.
diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/gh-pages) branch hosts the contents of this directory at <https://plantbreeding.github.io/BrAPI-Manuscript2/>.
-The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/e787e4c0ef83569aff82e68b4b63bcd7fbb05973/>.
+The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://plantbreeding.github.io/BrAPI-Manuscript2/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`e787e4c0ef83569aff82e68b4b63bcd7fbb05973`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/e787e4c0ef83569aff82e68b4b63bcd7fbb05973).
+[`cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d).
diff --git a/index.html b/index.html
diff --git a/manuscript.pdf b/manuscript.pdf
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/AGENT_Genotyping_Data_Flow.png b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/AGENT_Genotyping_Data_Flow.png
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/AGENT_WebFrontend.pptx b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/AGENT_WebFrontend.pptx
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/AGENT_Web_Frontend.png b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/AGENT_Web_Frontend.png
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Application_Chart.pdf b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Application_Chart.pdf
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Application_Chart.xlsx b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Application_Chart.xlsx
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Domains_v2-1_vertical.png b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Domains_v2-1_vertical.png
diff --git a/...05a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Paper_Applications_Chart.png b/...05a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_Paper_Applications_Chart.png
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_org_structure.jpg b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/BrAPI_org_structure.jpg
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/Schema_FAIDARE.png b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/Schema_FAIDARE.png
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/Schema_Florilege.jpg b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/Schema_Florilege.jpg
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/github.svg b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/github.svg
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/green_check.png b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/green_check.png
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/mastodon.svg b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/mastodon.svg
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/orcid.svg b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/orcid.svg
diff --git a/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/twitter.svg b/v/cd105a0d6c9ddd8cefe2cf6e257d7329e9d9e59d/images/twitter.svg