Merge pull request #33 from mchabito/IBP-Tools

[ci skip]

This build is based on
1da7aa4.

This commit was created by the following CI build and job:
https://github.com/plantbreeding/BrAPI-Manuscript2/commit/1da7aa46d4ff95b0972b3699a714538da3747977/checks
https://github.com/plantbreeding/BrAPI-Manuscript2/actions/runs/8722100488

manuscript.html

@@ -34,6 +34,12 @@
   <meta name="author" content="Suman Kumar" />
   <meta name="author" content="Matthijs Brouwer" />
   <meta name="author" content="Bert Droesbeke" />
+  <meta name="author" content="Jan Erik Backlund" />
+  <meta name="author" content="Aldrin Batac" />
+  <meta name="author" content="Mariano Crimi" />
+  <meta name="author" content="Corina Habito" />
+  <meta name="author" content="Nahuel Soldevilla" />
+  <meta name="author" content="Clarysabel Tovar" />
   <meta name="author" content="Sebastian Beier" />
   <meta name="author" content="Valentin Guignon" />
   <meta name="dcterms.date" content="2024-04-17" />
@@ -84,8 +90,8 @@
   <meta name="dc.date" content="2024-04-17" />
   <meta name="citation_publication_date" content="2024-04-17" />
   <meta property="article:published_time" content="2024-04-17" />
-  <meta name="dc.modified" content="2024-04-17T09:31:25+00:00" />
-  <meta property="article:modified_time" content="2024-04-17T09:31:25+00:00" />
+  <meta name="dc.modified" content="2024-04-17T12:45:06+00:00" />
+  <meta property="article:modified_time" content="2024-04-17T12:45:06+00:00" />
   <meta name="dc.language" content="en-US" />
   <meta name="citation_language" content="en-US" />
   <meta name="dc.relation.ispartof" content="Manubot" />
@@ -174,6 +180,21 @@
   <meta name="citation_author" content="Bert Droesbeke" />
   <meta name="citation_author_institution" content="VIB Data Core" />
   <meta name="citation_author_orcid" content="0000-0003-0522-5674" />
+  <meta name="citation_author" content="Jan Erik Backlund" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author" content="Aldrin Batac" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author_institution" content="Leafnode LLC" />
+  <meta name="citation_author" content="Mariano Crimi" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author" content="Corina Habito" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author" content="Nahuel Soldevilla" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author_institution" content="Leafnode LLC" />
+  <meta name="citation_author" content="Clarysabel Tovar" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author_institution" content="Leafnode LLC" />
   <meta name="citation_author" content="Sebastian Beier" />
   <meta name="citation_author_institution" content="Institute of Bio- and Geosciences (IBG-4: Bioinformatics), CEPLAS, Forschungszenturm Jülich GmbH, Wilhelm Johnen Straße, 52428 Jülich, Germany" />
   <meta name="citation_author_institution" content="Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany" />
@@ -187,9 +208,9 @@
   <meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
   <meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/" />
-  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/" />
-  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/" />
+  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/" />
+  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
@@ -206,9 +227,9 @@ <h1 class="title">BrAPI Success Stories</h1>
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/">permalink</a>)
+(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/1df77eeef3b9e394e0536abbc221c6e75063d5c0">plantbreeding/BrAPI-Manuscript2@1df77ee</a>
+from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/1da7aa46d4ff95b0972b3699a714538da3747977">plantbreeding/BrAPI-Manuscript2@1da7aa4</a>
 on April 17, 2024.
 </em></small></p>
 <h2 id="authors">Authors</h2>
@@ -463,6 +484,36 @@ <h2 id="authors">Authors</h2>
 <small>
 VIB Data Core
 </small></p></li>
+<li><p><strong>Jan Erik Backlund</strong>
+<br>
+<small>
+Integrated Breeding Platform
+</small></p></li>
+<li><p><strong>Aldrin Batac</strong>
+<br>
+<small>
+Integrated Breeding Platform; Leafnode LLC
+</small></p></li>
+<li><p><strong>Mariano Crimi</strong>
+<br>
+<small>
+Integrated Breeding Platform
+</small></p></li>
+<li><p><strong>Corina Habito</strong>
+<br>
+<small>
+Integrated Breeding Platform
+</small></p></li>
+<li><p><strong>Nahuel Soldevilla</strong>
+<br>
+<small>
+Integrated Breeding Platform; Leafnode LLC
+</small></p></li>
+<li><p><strong>Clarysabel Tovar</strong>
+<br>
+<small>
+Integrated Breeding Platform; Leafnode LLC
+</small></p></li>
 <li><p><strong>Sebastian Beier</strong>
 <br>
 <img src="images/orcid.svg" class="inline_icon" width="16" height="16" alt="ORCID icon" />

manuscript.md

@@ -39,6 +39,12 @@ author-meta:
 - Suman Kumar
 - Matthijs Brouwer
 - Bert Droesbeke
+- Jan Erik Backlund
+- Aldrin Batac
+- Mariano Crimi
+- Corina Habito
+- Nahuel Soldevilla
+- Clarysabel Tovar
 - Sebastian Beier
 - Valentin Guignon
 header-includes: |
@@ -55,8 +61,8 @@ header-includes: |
   <meta name="dc.date" content="2024-04-17" />
   <meta name="citation_publication_date" content="2024-04-17" />
   <meta property="article:published_time" content="2024-04-17" />
-  <meta name="dc.modified" content="2024-04-17T09:31:25+00:00" />
-  <meta property="article:modified_time" content="2024-04-17T09:31:25+00:00" />
+  <meta name="dc.modified" content="2024-04-17T12:45:06+00:00" />
+  <meta property="article:modified_time" content="2024-04-17T12:45:06+00:00" />
   <meta name="dc.language" content="en-US" />
   <meta name="citation_language" content="en-US" />
   <meta name="dc.relation.ispartof" content="Manubot" />
@@ -145,6 +151,21 @@ header-includes: |
   <meta name="citation_author" content="Bert Droesbeke" />
   <meta name="citation_author_institution" content="VIB Data Core" />
   <meta name="citation_author_orcid" content="0000-0003-0522-5674" />
+  <meta name="citation_author" content="Jan Erik Backlund" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author" content="Aldrin Batac" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author_institution" content="Leafnode LLC" />
+  <meta name="citation_author" content="Mariano Crimi" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author" content="Corina Habito" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author" content="Nahuel Soldevilla" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author_institution" content="Leafnode LLC" />
+  <meta name="citation_author" content="Clarysabel Tovar" />
+  <meta name="citation_author_institution" content="Integrated Breeding Platform" />
+  <meta name="citation_author_institution" content="Leafnode LLC" />
   <meta name="citation_author" content="Sebastian Beier" />
   <meta name="citation_author_institution" content="Institute of Bio- and Geosciences (IBG-4: Bioinformatics), CEPLAS, Forschungszenturm Jülich GmbH, Wilhelm Johnen Straße, 52428 Jülich, Germany" />
   <meta name="citation_author_institution" content="Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany" />
@@ -158,9 +179,9 @@ header-includes: |
   <meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
   <meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/" />
-  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/" />
-  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/" />
+  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/" />
+  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
@@ -182,9 +203,9 @@ manubot-clear-requests-cache: false
 
 <small><em>
 This manuscript
-([permalink](https://plantbreeding.github.io/BrAPI-Manuscript2/v/1df77eeef3b9e394e0536abbc221c6e75063d5c0/))
+([permalink](https://plantbreeding.github.io/BrAPI-Manuscript2/v/1da7aa46d4ff95b0972b3699a714538da3747977/))
 was automatically generated
-from [plantbreeding/BrAPI-Manuscript2@1df77ee](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/1df77eeef3b9e394e0536abbc221c6e75063d5c0)
+from [plantbreeding/BrAPI-Manuscript2@1da7aa4](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/1da7aa46d4ff95b0972b3699a714538da3747977)
 on April 17, 2024.
 </em></small>
 
@@ -474,6 +495,42 @@ on April 17, 2024.
      VIB Data Core
   </small>
 
++ **Jan Erik Backlund**
+  <br>
+  <small>
+     Integrated Breeding Platform
+  </small>
+
++ **Aldrin Batac**
+  <br>
+  <small>
+     Integrated Breeding Platform; Leafnode LLC
+  </small>
+
++ **Mariano Crimi**
+  <br>
+  <small>
+     Integrated Breeding Platform
+  </small>
+
++ **Corina Habito**
+  <br>
+  <small>
+     Integrated Breeding Platform
+  </small>
+
++ **Nahuel Soldevilla**
+  <br>
+  <small>
+     Integrated Breeding Platform; Leafnode LLC
+  </small>
+
++ **Clarysabel Tovar**
+  <br>
+  <small>
+     Integrated Breeding Platform; Leafnode LLC
+  </small>
+
 + **Sebastian Beier**
   <br>
     ![ORCID icon](images/orcid.svg){.inline_icon width=16 height=16}

spelling-errors.txt

@@ -13,6 +13,8 @@ ARS
 aspirational
 backcrossing
 backend
+Backlund
+Batac
 Batbaby
 Baz
 bedroesb
@@ -23,12 +25,12 @@ Bielefeld
 BIMS
 Bioeconomy
 BioinfOmics
-bioinformatics
+Bioinformatics
 BioSC
 Bioversity
 BMS
 BMS’s
-BrAPi
+BrAPI
 BrapiCoordinatorSelby
 BrapMan
 BrAPP
@@ -43,12 +45,14 @@ CGIAR
 chaneylc
 CIAT
 CIRAD
+Clarysabel
 CLI
 ClimMob
 CottonGEN
 COVID
 cpommier
 CRAN
+Crimi
 DArTView
 DarwinCore
 dataset
@@ -81,16 +85,16 @@ FLORILÈGE
 focussing
 Forschungszentrum
 Forschungszenturm
-genebank
+Genebank
 genebanks
 genomic
 genotype
 genotypes
 genotypic
 genotyping
 Geosciences
-Germplasm
-Gigwa
+germplasm
+GIGWA
 GLIS
 GmbH
 Gouripriya
@@ -101,9 +105,10 @@ guignonv
 Guilhem
 GuilhemSempere
 GWAS
+Habito
 hackathon
-Hackathons
-Haplotype
+hackathons
+haplotype
 haplotypes
 hoc
 HortControl
@@ -131,16 +136,18 @@ JSON
 Jülich
 Kersey
 Kew
-khaled
+Khaled
 koenig
 König
 Kumar
 Lamos
 Lange
 langeipk
 LD
+Leafnode
 leetaei
 LIDAR
+LLC
 López
 Marsella
 Matthijs
@@ -152,6 +159,7 @@ MrBean
 multifactorial
 musa
 MusaBase
+Nahuel
 Nationale
 NIFA
 OAuth
@@ -165,7 +173,7 @@ phenomic
 Phenospex
 phenotypes
 phenotypic
-Phenotyping
+phenotyping
 PHG
 PHIS’s
 phylogenetic
@@ -187,12 +195,14 @@ Sempéré
 Shamaa
 situ
 SnpClust
+Soldevilla
 stateful
 Straße
 Suman
 Taein
 tcasstevens
 TCP
+Tovar
 transcriptomics
 transposable
 trife