MIRA url fix

[ci skip]

This build is based on
e974bf4.

This commit was created by the following CI build and job:
https://github.com/plantbreeding/BrAPI-Manuscript2/commit/e974bf4da566b76698264aeb8b886291d813c44c/checks
https://github.com/plantbreeding/BrAPI-Manuscript2/actions/runs/10455321141

README.md

@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/plantbreeding/BrAPI-Manuscript2/tree/gh-pages) branch hosts the contents of this directory at <https://plantbreeding.github.io/BrAPI-Manuscript2/>.
-The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/2afe9b485405236f56640f2fb300883843a1bb86/>.
+The permalink for this webpage version is <https://plantbreeding.github.io/BrAPI-Manuscript2/v/e974bf4da566b76698264aeb8b886291d813c44c/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://plantbreeding.github.io/BrAPI-Manuscript2/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`2afe9b485405236f56640f2fb300883843a1bb86`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/2afe9b485405236f56640f2fb300883843a1bb86).
+[`e974bf4da566b76698264aeb8b886291d813c44c`](https://github.com/plantbreeding/BrAPI-Manuscript2/commit/e974bf4da566b76698264aeb8b886291d813c44c).

index.html

@@ -129,8 +129,8 @@
   <meta name="dc.date" content="2024-08-19" />
   <meta name="citation_publication_date" content="2024-08-19" />
   <meta property="article:published_time" content="2024-08-19" />
-  <meta name="dc.modified" content="2024-08-19T13:52:24+00:00" />
-  <meta property="article:modified_time" content="2024-08-19T13:52:24+00:00" />
+  <meta name="dc.modified" content="2024-08-19T14:30:16+00:00" />
+  <meta property="article:modified_time" content="2024-08-19T14:30:16+00:00" />
   <meta name="dc.language" content="en-US" />
   <meta name="citation_language" content="en-US" />
   <meta name="dc.relation.ispartof" content="Manubot" />
@@ -368,9 +368,9 @@
   <meta name="citation_fulltext_html_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/" />
   <meta name="citation_pdf_url" content="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://plantbreeding.github.io/BrAPI-Manuscript2/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/2afe9b485405236f56640f2fb300883843a1bb86/" />
-  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/2afe9b485405236f56640f2fb300883843a1bb86/" />
-  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/2afe9b485405236f56640f2fb300883843a1bb86/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/e974bf4da566b76698264aeb8b886291d813c44c/" />
+  <meta name="manubot_html_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/e974bf4da566b76698264aeb8b886291d813c44c/" />
+  <meta name="manubot_pdf_url_versioned" content="https://plantbreeding.github.io/BrAPI-Manuscript2/v/e974bf4da566b76698264aeb8b886291d813c44c/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
@@ -387,9 +387,9 @@ <h1 class="title">BrAPI Success Stories</h1>
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/2afe9b485405236f56640f2fb300883843a1bb86/">permalink</a>)
+(<a href="https://plantbreeding.github.io/BrAPI-Manuscript2/v/e974bf4da566b76698264aeb8b886291d813c44c/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/2afe9b485405236f56640f2fb300883843a1bb86">plantbreeding/BrAPI-Manuscript2@2afe9b4</a>
+from <a href="https://github.com/plantbreeding/BrAPI-Manuscript2/tree/e974bf4da566b76698264aeb8b886291d813c44c">plantbreeding/BrAPI-Manuscript2@e974bf4</a>
 on August 19, 2024.
 </em></small></p>
 <h2 id="authors">Authors</h2>
@@ -974,6 +974,9 @@ <h2 id="authors">Authors</h2>
 </small></p></li>
 <li><p><strong>Joseph Ruff</strong>
 <br>
+· <img src="images/github.svg" class="inline_icon" width="16" height="16" alt="GitHub icon" />
+<a href="https://github.com/JosephRuff">JosephRuff</a>
+<br>
 <small>
 Royal Botanic Gardens, Kew
 · Funded by The AGENT project is funded by the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 862613.
@@ -1391,7 +1394,7 @@ <h2 id="acknowledgements">Acknowledgements</h2>
 <li>U.S. Department of Agriculture, under agreement numbers [8062-21000-043-004-A, 8062-21000-052-002-A, and 8062-21000-052-003-A]</li>
 <li>This work was funded and supported by ELIXIR, the research infrastructure for life science data.</li>
 <li>The French Networks of Biological Resource Centres for Agricultural, Environmental and Life Sciences, doi: 10.15454/b4ec-tf49</li>
-<li>The work was supported by the German Research Foundation DFG under the grant agreement number 442032008 (NFDI4Biodiversity). NFDI4Biodiversity is part of NFDI, the National Research Data Infrastructure in Germany (&lt;www.nfdi.de&gt;).</li>
+<li>The work was supported by the German Research Foundation DFG under the grant agreement number 442032008 (NFDI4Biodiversity). NFDI4Biodiversity is part of NFDI, the National Research Data Infrastructure in Germany (<a href="www.nfdi.de">www.nfdi.de</a>).</li>
 <li>The Bill and Malinda Gates Foundation in cooperation with the Excellence in Breeding Platform of the CGIAR</li>
 </ul>
 <h2 class="page_break_before" id="author-contributions">Author Contributions</h2>