Skip to content

Commit

Permalink
BIMS edits JH
Browse files Browse the repository at this point in the history
  • Loading branch information
jmh579 committed Jul 15, 2024
1 parent e4620b4 commit e4f471a
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions content/03.04.01.BIMS.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,9 @@
#### BIMS

<!-- Sook -->
[BIMS](https://wwww.breedwithbims.org) (Breeding Information Management System) [@doi:10.1093/database/baab054] is a free, secure, and online breeding management system which allows breeders to store, manage, archive, and analyze their private breeding program data. BIMS enables individual breeders to have complete control of their own breeding data along with access to tools such as data import/export, data analysis, and data archiving for their germplasm, phenotype, genotype, and image data. BIMS is currently implemented in five community databases, the Genome Database for Rosaceae [@doi:10.1093/nar/gky1000], CottonGEN [@doi:10.3390/plants10122805], the Citrus Genome Database, the Pulse Crop Database, and the Genome Database for Vaccinium. BIMS in these five community databases enables individual breeders to import publicly available data so that they can utilize public data in their breeding program. BIMS is also implemented in the public database [breedwithbims.org](https://wwww.breedwithbims.org) that any crop breeder can use.
[The Breeding Information Management System (BIMS)](https://wwww.breedwithbims.org) [@doi:10.1093/database/baab054] is a free, secure, online breeding management system which allows breeders to store, manage, archive, and analyze their private breeding program data.
BIMS enables individual breeders to have complete control of their own breeding data along with access to tools such as data import,export, analysis, and archiving for their germplasm, phenotype, genotype, and image data.
BIMS is currently implemented in five community databases, the Genome Database for Rosaceae [@doi:10.1093/nar/gky1000], CottonGEN [@doi:10.3390/plants10122805], the Citrus Genome Database, the Pulse Crop Database, and the Genome Database for Vaccinium, where it enables individual breeders to import publicly available data.
BIMS is also implemented in the public database [breedwithbims.org](https://wwww.breedwithbims.org) that any crop breeder can use.

Right now, BIMS primarily utilizes BrAPI to connect with the Field Book Android App [@doi:10.2135/cropsci2013.08.0579], enabling seamless data transfer between BIMS and the app. Data transfer through BrAPI between BIMS and other resources such as BreedBase[@doi:10.1093/g3journal/jkac078], GIGWA[@doi:10.1093/gigascience/giz051], and Breeder Genomics Hub is on the way. Hopefully, the BIMS development team can easily reuse some of the solved use cases and workflows created by others in the BrAPI community.
BIMS primarily utilizes BrAPI to connect with Field Book [@doi:10.2135/cropsci2013.08.0579], enabling seamless data transfer between data collection and subsequent managament in BIMS. Data transfer through BrAPI between BIMS and other resources such as Breedbase [@doi:10.1093/g3journal/jkac078], GIGWA [@doi:10.1093/gigascience/giz051], and Breeder Genomics Hub is under development.

0 comments on commit e4f471a

Please sign in to comment.