Jenkins Commit

Specification/BrAPI-Core/ServerInfo/README.md

@@ -65,7 +65,7 @@ BAD    "call": "germplasm/<germplasmDbId>/pedigree"
 
 + Parameters
     + contentType (Optional, ) ... Filter the list of endpoints based on the response content type.
-    + dataType (Optional, ) ... **Deprecated in v2.1** Please use `contentType`. Github issue number #443The data format supported by the call.
+    + dataType (Optional, ) ... **Deprecated in v2.1** Please use `contentType`. Github issue number #443<br>The data format supported by the call.
     + Authorization (Optional, ) ... HTTP HEADER - Token used for Authorization <strong> Bearer {token_string} </strong>
 
 

Specification/BrAPI-Genotyping/CallSets/README.md

@@ -19,7 +19,7 @@ Gets a filtered list of `CallSet` JSON objects.
 <tr><td><span style="font-weight:bold;">callSetName</span></td><td>string</td><td>The call set name.</td></tr>
 <tr><td><span style="font-weight:bold;">created</span></td><td>string<br>(date-time)</td><td>The date this call set was created</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferences</span></td><td>array[object]</td><td>An array of external reference ids. These are references to this piece of data in an external system. Could be a simple string or a URI.</td></tr>
-<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460   The external reference ID. Could be a simple string or a URI.</td></tr>
+<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460  <br>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceId</span></td><td>string</td><td>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceSource</span></td><td>string</td><td>An identifier for the source system or database of this reference</td></tr>
 <tr><td><span style="font-weight:bold;">sampleDbId</span></td><td>string</td><td>The Biosample entity the call set data was generated from.</td></tr>
@@ -130,7 +130,7 @@ Gets a `CallSet` by ID.
 <tr><td><span style="font-weight:bold;">callSetName</span></td><td>string</td><td>The call set name.</td></tr>
 <tr><td><span style="font-weight:bold;">created</span></td><td>string<br>(date-time)</td><td>The date this call set was created</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferences</span></td><td>array[object]</td><td>An array of external reference ids. These are references to this piece of data in an external system. Could be a simple string or a URI.</td></tr>
-<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460   The external reference ID. Could be a simple string or a URI.</td></tr>
+<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460  <br>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceId</span></td><td>string</td><td>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceSource</span></td><td>string</td><td>An identifier for the source system or database of this reference</td></tr>
 <tr><td><span style="font-weight:bold;">sampleDbId</span></td><td>string</td><td>The Biosample entity the call set data was generated from.</td></tr>
@@ -364,7 +364,7 @@ Review the <a target="_blank" href="https://wiki.brapi.org/index.php/Search_Serv
 <tr><td><span style="font-weight:bold;">callSetDbIds</span></td><td>array[string]</td><td>Only return call sets with these DbIds (case-sensitive, exact match).</td></tr>
 <tr><td><span style="font-weight:bold;">callSetNames</span></td><td>array[string]</td><td>Only return call sets with these names (case-sensitive, exact match).</td></tr>
 <tr><td><span style="font-weight:bold;">commonCropNames</span></td><td>array[string]</td><td>The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched. It is most often used in multi-crop systems where digital resources need to be divided at a high level. Things like 'Maize', 'Wheat', and 'Rice' are examples of common crop names.  Use this parameter to only return results associated with the given crops.   Use `GET /commoncropnames` to find the list of available crops on a server.</td></tr>
-<tr><td><span style="font-weight:bold;">externalReferenceIDs</span></td><td>array[string]</td><td>**Deprecated in v2.1** Please use `externalReferenceIds`. Github issue number #460   List of external reference IDs. Could be a simple strings or a URIs. (use with `externalReferenceSources` parameter)</td></tr>
+<tr><td><span style="font-weight:bold;">externalReferenceIDs</span></td><td>array[string]</td><td>**Deprecated in v2.1** Please use `externalReferenceIds`. Github issue number #460  <br>List of external reference IDs. Could be a simple strings or a URIs. (use with `externalReferenceSources` parameter)</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferenceIds</span></td><td>array[string]</td><td>List of external reference IDs. Could be a simple strings or a URIs. (use with `externalReferenceSources` parameter)</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferenceSources</span></td><td>array[string]</td><td>List of identifiers for the source system or database of an external reference (use with `externalReferenceIDs` parameter)</td></tr>
 <tr><td><span style="font-weight:bold;">germplasmDbIds</span></td><td>array[string]</td><td>List of IDs which uniquely identify germplasm to search for</td></tr>
@@ -392,7 +392,7 @@ Review the <a target="_blank" href="https://wiki.brapi.org/index.php/Search_Serv
 <tr><td><span style="font-weight:bold;">callSetName</span></td><td>string</td><td>The call set name.</td></tr>
 <tr><td><span style="font-weight:bold;">created</span></td><td>string<br>(date-time)</td><td>The date this call set was created</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferences</span></td><td>array[object]</td><td>An array of external reference ids. These are references to this piece of data in an external system. Could be a simple string or a URI.</td></tr>
-<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460   The external reference ID. Could be a simple string or a URI.</td></tr>
+<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460  <br>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceId</span></td><td>string</td><td>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceSource</span></td><td>string</td><td>An identifier for the source system or database of this reference</td></tr>
 <tr><td><span style="font-weight:bold;">sampleDbId</span></td><td>string</td><td>The Biosample entity the call set data was generated from.</td></tr>
@@ -603,7 +603,7 @@ Review the <a target="_blank" href="https://wiki.brapi.org/index.php/Search_Serv
 <tr><td><span style="font-weight:bold;">callSetName</span></td><td>string</td><td>The call set name.</td></tr>
 <tr><td><span style="font-weight:bold;">created</span></td><td>string<br>(date-time)</td><td>The date this call set was created</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferences</span></td><td>array[object]</td><td>An array of external reference ids. These are references to this piece of data in an external system. Could be a simple string or a URI.</td></tr>
-<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460   The external reference ID. Could be a simple string or a URI.</td></tr>
+<tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceID</span></td><td>string</td><td>**Deprecated in v2.1** Please use `referenceId`. Github issue number #460  <br>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceId</span></td><td>string</td><td>The external reference ID. Could be a simple string or a URI.</td></tr>
 <tr><td>externalReferences<br><span style="font-weight:bold;margin-left:5px">.referenceSource</span></td><td>string</td><td>An identifier for the source system or database of this reference</td></tr>
 <tr><td><span style="font-weight:bold;">sampleDbId</span></td><td>string</td><td>The Biosample entity the call set data was generated from.</td></tr>