Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merge from BI server #1

Closed
wants to merge 93 commits into from
Closed

Merge from BI server #1

wants to merge 93 commits into from

Conversation

BrapiCoordinatorSelby
Copy link
Member

No description provided.

nickpalladino and others added 30 commits December 14, 2022 16:58
@nickpalladino
Merge pull request #7 from Breeding-Insight/release/0.7
7309c14 
Release/0.7
@timparsons
Update pom.xml
0f40c8b
@nickpalladino
Merge pull request #10 from Breeding-Insight/bug/BI-1781
7383fac 
BI-1781
@timparsons
Merge branch 'plantbreeding/brapi-Java-TestServer:brapi-server-v2' in…
7f64183 
…to develop
@mlm483
[BI-1771] - performance experiments
c23c0a9 
some initial performance experiments including indexing and batching database operations
@mlm483
[BI-1771] - added germplasm-related indexes
9a35d3f
@mlm483
[BI-1771] - reverted index annotation
e1f6cf9
@mlm483
[BI-1771] - reverted whitespace changes
bf0cc00
@mlm483
[BI-1771] - made create_indexes.sql idempotent
fb08a50 
added IF NOT EXISTS to CREATE INDEX statements
@mlm483
[BI-1771] - set hibernate.ddl-auto to create-only
deb9572
@mlm483
Merge pull request #11 from Breeding-Insight/bug/BI-1771
43c67e6 
[BI-1771] - Germplasm read/write performance
@timparsons
Merging release v0.8
5a29d77
@timparsons
[BI-1909] Exploring converting *ToOne relationships to lazy loading a…
7fce804 
…nd how performance can be improved for fetching OUs, Observations, and ObsVars
@timparsons
[BI-1909] NPE fix, converting sysouts to use Logger
441814a
@timparsons
[BI-1909] Updating GermplasmService to eagerly fetch related date for…
0f9ec46 
… searches

Also did some code cleanup, and added a logback.xml config file
@timparsons
[BI-1909] suggested changes
57da450
@timparsons
Merge pull request #14 from Breeding-Insight/bug/BI-1909
504e1de 
BI-1909
@timparsons
Merge branch 'release/0.8.1' into develop
8f4d7b1
@mlm483
Merge pull request #15 from plantbreeding/brapi-server-v2
0e343c6 
Pull in latest from upstream.
@mlm483
[BI-1945] - saving work in progress
fc92574
@mlm483
[BI-1945] - store additionalInfo on primary entities as JSONB
9bc8ade
@mlm483
[BI-1945] - optimized imports
65f061d
@mlm483
[BI-1945] - updated template, readme
4789ff9
@mlm483
[BI-1945] - cleaned up SQL dummy data migrations
fdcca4d
@mlm483
[BI-1945] - updated template
3e2e3a0
@mlm483
[BI-1945] - removed unused class
0690839
@mlm483
[BI-1945] - renamed method
ed01390
@mlm483
[BI-1945] - handled null case
aa0f1a5
@mlm483
[BI-1945] - added stringtype=unspecified to template
8bd3c32
@mlm483
[BI-1945] - removed debug log
03eedc4
mlm483 and others added 27 commits October 7, 2024 12:07
@mlm483
Merge pull request #37 from Breeding-Insight/feature/BI-2304
86153e9 
BI-2304 - merge into release/1.0
@mlm483
Merge pull request #39 from Breeding-Insight/release/1.0
8ec5466 
Merge for Release/1.0
@dmeidlin
create batch entity and controller endpoints
e9e8acd
@dmeidlin
json deserialize searchrequest sub-types
492aabd
@dmeidlin
return batchDbID in POST batches response results
46134a2
@dmeidlin
refactor
f2927aa
@dmeidlin
add constraint to cascade on delete for list_item
c33a8b6
@dmeidlin
add soft_deleted column to list tables
b5f09ec
@dmeidlin
modify list repository to include clause softDelete=falsee
a226dee
@dmeidlin
use where clause and transactional annotations
5f26eec
@dmeidlin
soft-delete batch lists
0aa634a
@dmeidlin
add hard delete of single trial
04dfa6c
@dmeidlin
create hard-delete endpoint for single sample
fe1ae79
@dmeidlin
cascade delete for trial and sample
f3283f4
@dmeidlin
add soft_delete columns to trial and sample related tables
aa7386e
@dmeidlin
create sample service soft-delete method
008e033
@dmeidlin
add soft-delete method to trial service
80838e1
@dmeidlin
create Trial and Sample components
6aab414
@dmeidlin
optimize imports
e94040c
@dmeidlin
respond with 204 for successful delete
5d915ba
@dmeidlin
return entity dbids in response for POST deleteBatch
1d4a768
@dmeidlin
add batchDeleteDbId query param to GET endpoints for lists, trials, s…
a07aa4e 
…amples
@dmeidlin
create new exception class for wrong batch delete type
8f33016
@dmeidlin
delete batch entity when deleting batch contents
f251236
@dmeidlin
add cascade delete constraints for study foreign keys
e1761f8
@dmeidlin
rename batch to batch delete
b2a6ee3
@dmeidlin
Merge pull request #38 from Breeding-Insight/hackathon/delete-germplasm
dbe8cac 
BI-2374 Create Endpoints for Processing Batch Deletes and Single Deletes of Lists, Trials, and Samples
@jloux-brapi jloux-brapi changed the base branch from brapi-server-v2 to bi-server-impl December 17, 2024 20:22
@jloux-brapi
Copy link

Closing in favor of #2, which is essentially this MR but with the code rebased to the prod fork and a branch made in the prod repo.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
7 participants
@BrapiCoordinatorSelby @jloux-brapi @nickpalladino @timparsons @mlm483 @davedrp @dmeidlin