Code

Merge from BI Server#2

Code

Open

jloux-brapi wants to merge 66 commits intobrapi-server-v2plantbreeding/brapi-Java-ProdServer:brapi-server-v2from bi-server-implplantbreeding/brapi-Java-ProdServer:bi-server-implCopy head branch name to clipboard

+6,832-12,513

Commits

Commits on Dec 17, 2024

• [BI-1771] - performance experiments

  Show description for aa958f9
  

  mlm483

  authored and

  jloux-brapi

  committed
  aa958f9

• [BI-1771] - added germplasm-related indexes

  jloux-brapi

  committed
  d370995

• [BI-1771] - reverted index annotation

  

  mlm483

  authored and

  jloux-brapi

  committed
  853c4b6

• [BI-1771] - reverted whitespace changes

  

  mlm483

  authored and

  jloux-brapi

  committed
  1bafb97

• [BI-1771] - made create_indexes.sql idempotent

  Show description for 511744a
  

  mlm483

  authored and

  jloux-brapi

  committed
  511744a

• [BI-1909] Exploring converting *ToOne relationships to lazy loading and how performance can be improved for fetching OUs, Observations, and ObsVars

  

  timparsons

  authored and

  jloux-brapi

  committed
  17f208b

• [BI-1909] NPE fix, converting sysouts to use Logger

  

  timparsons

  authored and

  jloux-brapi

  committed
  65f41bb

• [BI-1909] Updating GermplasmService to eagerly fetch related date for searches

  Show description for f213636
  

  timparsons

  authored and

  jloux-brapi

  committed
  f213636

• [BI-1909] suggested changes

  

  timparsons

  authored and

  jloux-brapi

  committed
  444ac44

• Create pull.yml

  

  timparsons

  authored and

  jloux-brapi

  committed
  7ae834a

• [BI-1945] - saving work in progress

  

  mlm483

  authored and

  jloux-brapi

  committed
  f3963b0

• [BI-1945] - store additionalInfo on primary entities as JSONB

  

  mlm483

  authored and

  jloux-brapi

  committed
  14347ea

• [BI-1945] - optimized imports

  

  mlm483

  authored and

  jloux-brapi

  committed
  0a6c1c6

• [BI-1945] - updated template, readme

  jloux-brapi

  committed
  dfe5e82

• [BI-1945] - cleaned up SQL dummy data migrations

  

  mlm483

  authored and

  jloux-brapi

  committed
  32a1c91

• [BI-1945] - updated template

  

  mlm483

  authored and

  jloux-brapi

  committed
  c31973b

• [BI-1945] - removed unused class

  

  mlm483

  authored and

  jloux-brapi

  committed
  3d73553

• [BI-1945] - renamed method

  

  mlm483

  authored and

  jloux-brapi

  committed
  213d51b

• [BI-1945] - handled null case

  

  mlm483

  authored and

  jloux-brapi

  committed
  ea38550

• [BI-1945] - added stringtype=unspecified to template

  

  mlm483

  authored and

  jloux-brapi

  committed
  14d780c

• [BI-1945] - removed debug log

  

  mlm483

  authored and

  jloux-brapi

  committed
  027eff8

• [BI-1945] - optimized imports

  

  mlm483

  authored and

  jloux-brapi

  committed
  2e57478

• [BI-1945] - removed additionalInfo joins

  Show description for 246e6a1
  

  mlm483

  authored and

  jloux-brapi

  committed
  246e6a1

• [BI-1945] - updated README.md

  

  mlm483

  authored and

  jloux-brapi

  committed
  44c6a6a

• [BI-1945] - added ON DELETE CASCADE to xref linking tables

  

  mlm483

  authored and

  jloux-brapi

  committed
  4d25468

• [BI-2051] - batched inserts for efficiency

  

  mlm483

  authored and

  jloux-brapi

  committed
  530ae23

• [BI-2051] - removed comment

  

  mlm483

  authored and

  jloux-brapi

  committed
  1777923

• [BI-2040] The fetchScaleValidValueCategories() method was causing the problem. It was not needed. The ScaleVlalidValueCategories were present (even though it is set to fetch LAZY) because of the SQ…

  Show description for 9bb3096
  

  davedrp

  authored and

  jloux-brapi

  committed
  9bb3096

• [BI-2040] removed all calls to fetchXXXXX(page) and the methods themsleves

  

  davedrp

  authored and

  jloux-brapi

  committed
  dc3aa96

• [BI-2040] removed unused import-statements from ObservationVariableService.java

  

  davedrp

  authored and

  jloux-brapi

  committed
  f3c8871

• [BI-2078] - made performance improvements (thanks BrapiCoordinatorSelby)

  

  mlm483

  authored and

  jloux-brapi

  committed
  b850578

• Filter out pedigree nodes with null germplasm

  

  nickpalladino

  authored and

  jloux-brapi

  committed
  0c226fb

• Updated comment

  

  nickpalladino

  authored and

  jloux-brapi

  committed
  af5e584

• [BI-2109] - added migration for datasets

  

  mlm483

  authored and

  jloux-brapi

  committed
  f02603a

• [BI-2109] - made migration safer

  

  mlm483

  authored and

  jloux-brapi

  committed
  df79493

• [BI-2304] - added migrations for list position

  

  mlm483

  authored and

  jloux-brapi

  committed
  d2c9401

• [BI-2304] - fixed migration

  

  mlm483

  authored and

  jloux-brapi

  committed
  ad9ae52

• [BI-2304] - preserve list order without changing API

  

  mlm483

  authored and

  jloux-brapi

  committed
  38978d3

• [BI-2304] - used zero-indexing in migration

  

  mlm483

  authored and

  jloux-brapi

  committed
  1409352

• [BI-2304] - changes based on review

  

  mlm483

  authored and

  jloux-brapi

  committed
  e2548a7

• create batch entity and controller endpoints

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  8281201

• json deserialize searchrequest sub-types

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  92aa47f

• return batchDbID in POST batches response results

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  7b6b61a

• refactor

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  e74184b

• add constraint to cascade on delete for list_item

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  5c00c3d

• add soft_deleted column to list tables

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  beb95c4

• modify list repository to include clause softDelete=falsee

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  9ebbfb1

• use where clause and transactional annotations

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  ed8ee46

• soft-delete batch lists

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  0c38c55

• add hard delete of single trial

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  0191666

• create hard-delete endpoint for single sample

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  0547cbc

• cascade delete for trial and sample

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  d659040

• add soft_delete columns to trial and sample related tables

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  0d4ac86

• create sample service soft-delete method

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  fc10679

• add soft-delete method to trial service

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  aa8b86f

• create Trial and Sample components

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  a5d8656

• optimize imports

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  b96e1c9

• respond with 204 for successful delete

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  f2036bf

• return entity dbids in response for POST deleteBatch

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  cbdd0f3

• add batchDeleteDbId query param to GET endpoints for lists, trials, samples

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  493f88f

• create new exception class for wrong batch delete type

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  6fa2c21

• delete batch entity when deleting batch contents

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  71cdbb1

• add cascade delete constraints for study foreign keys

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  bd2b039

• rename batch to batch delete

  

  dmeidlin

  authored and

  jloux-brapi

  committed
  0efca81

• Solve dummy data migration issues

  jloux-brapi

  committed
  b57a17d

Commits on Dec 19, 2024

• Merge pull request plantbreeding#75 from plantbreeding/keycloak-dev-docker

  Show description for b7ecfda
  jloux-brapi

  committed
  b7ecfda