wip: mixcr successfully runs for input samples #6
dbolotinbuild.yaml
on: push
Annotations
3 errors
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src/wf.test.ts > empty imputs:
test/src/wf.test.ts#L22
Error: 1 errors, first error: F [Error]: error in field presets of NG:0xec: {"errorType":"","message":"resource \"NG:0xEB\" has input errors:\nfield \"NG:0xEB/blob\": resource \"NG:0xEA\" has input errors:\nfield \"NG:0xEA/resource\": resource \"NG:0xF9\" has input errors:\nfield \"NG:0xF9/workdirIn\": failed to run command: \"mixcr\" failed to start: exec: \"mixcr\": executable file not found in $PATH"}
at resolveWithCommon (bundle.js:4048)
at resolve (bundle.js:4045)
at <anonymous> (bundle.js:4474)
at <anonymous> (bundle.js)
Host: QuickJSUnwrapError:
at P.unwrapResult (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/context.ts:1023:27)
at block (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/context.ts:108:19)
at Function.withScope (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/lifetime.ts:251:14)
at _JsExecutionContext.runCallback (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/context.ts:101:20)
at Object.___kernel___ (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/index.ts:26:25)
at renderSelfState (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:384:28)
at updateCellStateWithoutValue (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:566:7)
at calculateChildren (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:420:16)
at updateCellStateWithoutValue (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:571:26)
at calculateChildren (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:420:16) {
cause: {
name: 'Error',
message: 'error in field presets of NG:0xec: {"errorType":"","message":"resource \\"NG:0xEB\\" has input errors:\\nfield \\"NG:0xEB/blob\\": resource \\"NG:0xEA\\" has input errors:\\nfield \\"NG:0xEA/resource\\": resource \\"NG:0xF9\\" has input errors:\\nfield \\"NG:0xF9/workdirIn\\": failed to run command: \\"mixcr\\" failed to start: exec: \\"mixcr\\": executable file not found in $PATH"}',
stack: ' at resolveWithCommon (bundle.js:4048)\n' +
' at resolve (bundle.js:4045)\n' +
' at <anonymous> (bundle.js:4474)\n' +
' at <anonymous> (bundle.js)\n'
}
}
❯ P.unwrapResult ../node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/context.ts:1023:27
❯ block ../node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/context.ts:108:19
❯ Function.withScope ../node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/lifetime.ts:251:14
❯ _JsExecutionContext.runCallback ../node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory
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src/wf.test.ts > simple project:
test/src/wf.test.ts#L103
Error: 1 errors, first error: F [Error]: error in field presets of NG:0x1a1: {"errorType":"","message":"resource \"NG:0x1A0\" has input errors:\nfield \"NG:0x1A0/blob\": resource \"NG:0x19F\" has input errors:\nfield \"NG:0x19F/resource\": resource \"NG:0x1AE\" has input errors:\nfield \"NG:0x1AE/workdirIn\": failed to run command: \"mixcr\" failed to start: exec: \"mixcr\": executable file not found in $PATH"}
at resolveWithCommon (bundle.js:4048)
at resolve (bundle.js:4045)
at <anonymous> (bundle.js:4474)
at <anonymous> (bundle.js)
Host: QuickJSUnwrapError:
at P.unwrapResult (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/context.ts:1023:27)
at block (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/context.ts:108:19)
at Function.withScope (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/lifetime.ts:251:14)
at _JsExecutionContext.runCallback (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/context.ts:101:20)
at Object.___kernel___ (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/index.ts:26:25)
at renderSelfState (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:384:28)
at updateCellStateWithoutValue (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:566:7)
at calculateChildren (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:420:16)
at updateCellStateWithoutValue (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:571:26)
at calculateChildren (/home/runner/work/block-mixcr-clonotyping/block-mixcr-clonotyping/node_modules/.pnpm/@milaboratory[email protected]/node_modules/@milaboratory/computable/src/computable/computable_state.ts:420:16) {
cause: {
name: 'Error',
message: 'error in field presets of NG:0x1a1: {"errorType":"","message":"resource \\"NG:0x1A0\\" has input errors:\\nfield \\"NG:0x1A0/blob\\": resource \\"NG:0x19F\\" has input errors:\\nfield \\"NG:0x19F/resource\\": resource \\"NG:0x1AE\\" has input errors:\\nfield \\"NG:0x1AE/workdirIn\\": failed to run command: \\"mixcr\\" failed to start: exec: \\"mixcr\\": executable file not found in $PATH"}',
stack: ' at resolveWithCommon (bundle.js:4048)\n' +
' at resolve (bundle.js:4045)\n' +
' at <anonymous> (bundle.js:4474)\n' +
' at <anonymous> (bundle.js)\n'
}
}
❯ P.unwrapResult ../node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/context.ts:1023:27
❯ block ../node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules/@milaboratory/pl-middle-layer/src/js_render/context.ts:108:19
❯ Function.withScope ../node_modules/.pnpm/[email protected]/node_modules/quickjs-emscripten-core/src/lifetime.ts:251:14
❯ _JsExecutionContext.runCallback ../node_modules/.pnpm/@milaboratory[email protected]_@[email protected]/node_modules
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run / unified (build test publish)
Process completed with exit code 1.
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Artifacts
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context
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311 Bytes |
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pl-docker-logs
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745 KB |
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