wip

package.json

@@ -51,8 +51,14 @@
     "pnpm1": {
       "overrides": {
         "@milaboratory/pl-middle-layer": "1.9.30",
-        "@milaboratory/tengo-sdk": "file:/Volumes/Data/Projects/MiLaboratory/blocks-beta/tengo-sdk"
+        "@milaboratory/tengo-sdk": "file:/Volumes/Data/Projects/MiLaboratory/blocks-beta/tengo-sdk/milaboratory-tengo-sdk-1.0.14.tgz",
+        "@milaboratory/tengo-template-builder": "file:/Volumes/Data/Projects/MiLaboratory/blocks-beta/tengo-template-builder"
       }
     }
+  },
+  "pnpm": {
+    "overrides": {
+      "@milaboratory/tengo-sdk": "file:/Volumes/Data/Projects/MiLaboratory/blocks-beta/tengo-sdk"
+    }
   }
 }

pnpm-workspace.yaml

@@ -6,12 +6,12 @@ packages:
   - test
 
 catalog:
-  '@milaboratory/tengo-template-builder': ^1.10.1
+  '@milaboratory/tengo-template-builder': ^1.11.1
   '@milaboratory/pl-block-tools': ^2.1.5
   '@milaboratory/block-builder': ^1.2.3
 
   '@milaboratory/sdk-ui': ^0.12.18
-  '@milaboratory/sdk-test': ^1.4.12
+  '@milaboratory/sdk-test': ^1.4.13
 
   '@milaboratory/tengo-sdk': ^1.0.15
 

workflow/src/process.tpl.tengo

@@ -35,7 +35,10 @@ self.body(func(inputs) {
 
 	mixcrResults := llPFrames.aggregate(
 			self.rawInputs().inputData, [1], mixcrAnalyzeTpl,
-			["qc"],
+			[{
+				type: "Resource",
+				name: "qc"
+			}],
 			false,
 			{
 				params: smart.createJsonResource({

workflow/src/pvconf_params.lib.tengo

@@ -0,0 +1,36 @@
+export {
+  "axes": [
+    {
+      "column": "cloneId",
+      "spec": {
+        "name": "pl7.app/vdj/cloneId",
+        "type": "Long"
+      }
+    }
+  ],
+  "columns": [
+    {
+      "column": "readCount",
+      "id": "read-count",
+      "name": "pl7.app/vdj/readCount",
+      "type": "Long",
+      "annotations": {
+        "pl7.app/label": "Number Of Reads"
+      }
+    },
+    {
+      "column": "nSeqCDR3",
+      "id": "n-seq-cdr3",
+      "type": "String",
+      "name": "pl7.app/vdj/nucleotideSequence",
+      "domain": {
+        "pl7.app/vdj/feature": "CDR3"
+      },
+      "annotations": {
+        "pl7.app/label": "CDR3 Nucleotide Sequence"
+      }
+    }
+  ],
+  "storageFormat": "Binary",
+  "partitionKeyLength": 0
+}