Fix cira stretch upcasting the data #241
Workflow file for this run
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name: CI | |
# https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#concurrency | |
# https://docs.github.com/en/developers/webhooks-and-events/events/github-event-types#pullrequestevent | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.number || github.event.ref }}-${{ github.event.type }} | |
cancel-in-progress: true | |
on: [push, pull_request] | |
env: | |
CACHE_NUMBER: 0 | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
continue-on-error: ${{ matrix.experimental }} | |
strategy: | |
fail-fast: true | |
matrix: | |
os: ["windows-latest", "ubuntu-latest", "macos-latest"] | |
python-version: ["3.10", "3.11", "3.12"] | |
experimental: [false] | |
include: | |
- python-version: "3.12" | |
os: "ubuntu-latest" | |
experimental: true | |
env: | |
PYTHON_VERSION: ${{ matrix.python-version }} | |
OS: ${{ matrix.os }} | |
UNSTABLE: ${{ matrix.experimental }} | |
ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
- name: Setup Conda Environment | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
miniforge-version: latest | |
python-version: ${{ matrix.python-version }} | |
activate-environment: test-environment | |
channels: conda-forge | |
- name: Set cache environment variables | |
shell: bash -l {0} | |
run: | | |
echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
CONDA_PREFIX=$(python -c "import sys; print(sys.prefix)") | |
echo "CONDA_PREFIX=$CONDA_PREFIX" >> $GITHUB_ENV | |
- uses: actions/cache@v4 | |
with: | |
path: ${{ env.CONDA_PREFIX }} | |
key: ${{ matrix.os }}-${{matrix.python-version}}-conda-${{ hashFiles('continuous_integration/environment.yaml') }}-${{ env.DATE }}-${{matrix.experimental}}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: mamba env update -n test-environment -f continuous_integration/environment.yaml | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install unstable dependencies | |
if: matrix.experimental == true | |
shell: bash -l {0} | |
# Install pykdtree with --no-build-isolation so it builds with numpy 2.0 | |
# We must get LD_PRELOAD for stdlibc++ or else the manylinux wheels | |
# may break the conda-forge libraries trying to use newer glibc versions | |
# NOTE: Many of the packages removed and then reinstalled below are to avoid | |
# compatibility issues with numpy 2. When conda-forge has numpy 2 available | |
# this shouldn't be needed. | |
run: | | |
python -m pip install versioneer extension-helpers setuptools-scm configobj pkgconfig hatchling hatch-vcs | |
python -m pip install \ | |
--index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple/ \ | |
--trusted-host pypi.anaconda.org \ | |
--no-deps --pre --upgrade \ | |
matplotlib \ | |
numpy \ | |
pandas \ | |
scipy | |
conda remove --force-remove -y pykdtree pyresample python-geotiepoints pyhdf netcdf4 h5py cftime astropy pyerfa || true | |
python -m pip install --upgrade --no-deps --pre --no-build-isolation \ | |
pyerfa \ | |
git+https://github.com/storpipfugl/pykdtree \ | |
git+https://github.com/pytroll/pyresample \ | |
git+https://github.com/pytroll/trollimage \ | |
git+https://github.com/pytroll/python-geotiepoints \ | |
git+https://github.com/fhs/pyhdf \ | |
git+https://github.com/h5py/h5py \ | |
git+https://github.com/h5netcdf/h5netcdf \ | |
git+https://github.com/Unidata/netcdf4-python \ | |
git+https://github.com/dask/dask \ | |
git+https://github.com/dask/distributed \ | |
git+https://github.com/Unidata/cftime \ | |
git+https://github.com/rasterio/rasterio \ | |
git+https://github.com/pydata/bottleneck \ | |
git+https://github.com/pydata/xarray \ | |
git+https://github.com/shapely/shapely \ | |
git+https://github.com/astropy/astropy | |
LD_PRELOAD=$(python -c "import sys; print(sys.prefix)")/lib/libstdc++.so | |
echo "LD_PRELOAD=${LD_PRELOAD}" >> $GITHUB_ENV | |
- name: Install satpy | |
shell: bash -l {0} | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Run unit tests | |
shell: bash -l {0} | |
run: | | |
export LD_PRELOAD=${{ env.LD_PRELOAD }}; | |
pytest -n auto --cov=satpy satpy/tests --cov-report=xml --cov-report= | |
- name: Upload unittest coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
flags: unittests | |
file: ./coverage.xml | |
env_vars: OS,PYTHON_VERSION,UNSTABLE | |
- name: Coveralls Parallel | |
uses: AndreMiras/coveralls-python-action@develop | |
with: | |
flag-name: run-${{ matrix.test_number }} | |
parallel: true | |
if: runner.os == 'Linux' | |
- name: Run behaviour tests | |
shell: bash -l {0} | |
run: | | |
export LD_PRELOAD=${{ env.LD_PRELOAD }}; | |
coverage run --source=satpy -m behave satpy/tests/features --tags=-download | |
coverage xml | |
- name: Upload behaviour test coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
flags: behaviourtests | |
file: ./coverage.xml | |
env_vars: OS,PYTHON_VERSION,UNSTABLE | |
coveralls: | |
needs: [test] | |
runs-on: ubuntu-latest | |
steps: | |
- name: Coveralls Finished | |
uses: AndreMiras/coveralls-python-action@develop | |
with: | |
parallel-finished: true |