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Using the instructions in https://github.com/ponder-lab/Pydev/blob/1404f86a651c07840cd0f4ef93bb1c1de65c9540/pom.xml#L98-L101 , you should use the following command to upgrade the version:
mvn -o tycho-versions:set-version -Dtycho.localArtifacts=ignore -DnewVersion=<version>-SNAPSHOT
<version> should be the version you want to change it to.
<version>