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popsim-consortium · Jan 27, 2025 · b2083cb · b2083cb
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diff --git a/main/_images/sec_catalog_anapla_models_mallardblackduck_2l19.png b/main/_images/sec_catalog_anapla_models_mallardblackduck_2l19.png
diff --git a/main/_images/sec_catalog_canfam_models_earlywolfadmixture_6f14.png b/main/_images/sec_catalog_canfam_models_earlywolfadmixture_6f14.png
diff --git a/main/_images/sec_catalog_homsap_models_americanadmixture_4b18.png b/main/_images/sec_catalog_homsap_models_americanadmixture_4b18.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_2t12.png b/main/_images/sec_catalog_homsap_models_outofafrica_2t12.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_3g09.png b/main/_images/sec_catalog_homsap_models_outofafrica_3g09.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafrica_4j17.png b/main/_images/sec_catalog_homsap_models_outofafrica_4j17.png
diff --git a/main/_images/sec_catalog_homsap_models_outofafricaarchaicadmixture_5r19.png b/main/_images/sec_catalog_homsap_models_outofafricaarchaicadmixture_5r19.png
diff --git a/.../sec_catalog_homsap_models_outofafricaextendedneandertaladmixturepulse_3i21.png b/.../sec_catalog_homsap_models_outofafricaextendedneandertaladmixturepulse_3i21.png
diff --git a/main/_images/sec_catalog_homsap_models_papuansoutofafrica_10j19.png b/main/_images/sec_catalog_homsap_models_papuansoutofafrica_10j19.png
diff --git a/main/_images/sec_catalog_orysat_models_bottleneckmigration_3c07.png b/main/_images/sec_catalog_orysat_models_bottleneckmigration_3c07.png
diff --git a/main/_images/sec_catalog_pantro_models_bonoboghost_4k19.png b/main/_images/sec_catalog_pantro_models_bonoboghost_4k19.png
diff --git a/main/_images/sec_catalog_ponabe_models_twospecies_2l11.png b/main/_images/sec_catalog_ponabe_models_twospecies_2l11.png
diff --git a/main/cli_arguments.html b/main/cli_arguments.html
@@ -691,7 +691,7 @@ <h4>Named Arguments<a class="headerlink" href="#named-arguments_repeat4" title="
 <p>Default: <code class="docutils literal notranslate"><span class="pre">False</span></code></p>
 </dd>
 <dt><kbd>-c, --chromosome</kbd></dt>
-<dd><p>Possible choices: CM009931.2, 1, NC_037638.1, CM009932.2, 2, NC_037639.1, CM009933.2, NC_037640.1, 3, CM009934.2, 4, NC_037641.1, CM009935.2, 5, NC_037642.1, CM009936.2, NC_037643.1, 6, CM009937.2, NC_037644.1, 7, CM009938.2, 8, NC_037645.1, CM009939.2, 9, NC_037646.1, CM009940.2, 10, NC_037647.1, CM009941.2, 11, NC_037648.1, CM009942.2, NC_037649.1, 12, CM009943.2, NC_037650.1, 13, CM009944.2, 14, NC_037651.1, CM009945.2, NC_037652.1, 15, CM009946.2, 16, NC_037653.1, CM009947.2, NC_001566.1, MT</p>
+<dd><p>Possible choices: CM009931.2, 1, NC_037638.1, CM009932.2, NC_037639.1, 2, CM009933.2, 3, NC_037640.1, CM009934.2, 4, NC_037641.1, CM009935.2, NC_037642.1, 5, CM009936.2, NC_037643.1, 6, CM009937.2, NC_037644.1, 7, CM009938.2, 8, NC_037645.1, CM009939.2, 9, NC_037646.1, CM009940.2, NC_037647.1, 10, CM009941.2, NC_037648.1, 11, CM009942.2, 12, NC_037649.1, CM009943.2, NC_037650.1, 13, CM009944.2, NC_037651.1, 14, CM009945.2, NC_037652.1, 15, CM009946.2, NC_037653.1, 16, CM009947.2, NC_001566.1, MT</p>
 <p>Simulate a specific chromosome. If no chromosome is given, simulate a generic contig of given length, specified using –length. Options: CM009931.2, CM009932.2, CM009933.2, CM009934.2, CM009935.2, CM009936.2, CM009937.2, CM009938.2, CM009939.2, CM009940.2, CM009941.2, CM009942.2, CM009943.2, CM009944.2, CM009945.2, CM009946.2, CM009947.2. Default=None.</p>
 </dd>
 <dt><kbd>-L, --length</kbd></dt>