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| Original file line number | Diff line number | Diff line change |
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| Dr-gene-to-phenotype-BF.txt | ||
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| This file contains phenotype annotations for zebrafish genes obtained from the Monarch Initiative v1.0. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'GeneID': identifier of the gene | ||
| 'Annotation': phenotype annotation | ||
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| Hs-gene-to-phenotype.txt | ||
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| This file contains phenotype annotations for human genes obtained from the Monarch Initiative v1.0. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'GeneID': identifier of the gene | ||
| 'Annotation': phenotype annotation | ||
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| Mm-gene-to-phenotype-BF.txt | ||
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| This file contains phenotype annotations for mouse genes obtained from the Monarch Initiative v1.0. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'GeneID': identifier of the gene | ||
| 'Annotation': phenotype annotation | ||
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| Human_MGI_orthologs.tsv | ||
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| This file contains orthologous pairs of human and mouse genes parsed from PANTHER v9.0. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'Mouse gene': identifier of mouse gene | ||
| 'Human gene': identifier of orthologous human gene | ||
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| Human_ZFIN_orthologs.tsv | ||
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| This file contains orthologous pairs of human and zebrafish genes parsed from PANTHER v9.0. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'Zebrafish gene': identifier of mouse gene | ||
| 'Human gene': identifier of orthologous human gene | ||
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| MGI_ZFIN_orthologs.tsv | ||
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| This file contains orthologous pairs of mouse and zebrafish genes parsed from PANTHER v9.0. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'Mouse gene': identifier of mouse gene | ||
| 'Zebrafish gene': identifier of orthologous zebrafish gene | ||
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| Ontology_R.zip | ||
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| This zip file contains ontology R. Ontology R includes MP, ZP, HPO, PATO, UBERON ontologies, equivalence axioms (as of July 9 2015), and grouping classes. | ||
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| Format: OWL (Ontology Web Language, ".owl") | ||
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| Ontology_H.zip | ||
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| This zip file contains ontology H. Ontology H includes MP, ZP, HPO, PATO, UBERON ontologies, equivalence axioms, homology axioms (as of July 9 2015), and homology grouping classes. | ||
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| Format: OWL (Ontology Web Language, ".owl") | ||
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| Ontology_H_random.zip | ||
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| This zip file contains ontology H'. Ontology H includes MP, ZP, HPO, PATO, UBERON ontologies, equivalence axioms, homology axioms (as of July 9 2015), and grouping classes. | ||
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| Format: OWL (Ontology Web Language, ".owl") | ||
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| homology.owl | ||
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| This file contains the 1,836 homology axioms obtained from Bgee v0.2. | ||
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| Format: (Ontology Web Language, ".owl") | ||
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| homology-random.owl | ||
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| This file contains the 1,836 randomized homology axioms. | ||
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| Format: (Ontology Web Language, ".owl") | ||
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| Inquiries: Prashanti Manda, http://orcid.org/0000-0002-7162-7770 | ||
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| Mouse_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and human orthologous genes computed using ontologies R and H. For format see below. | ||
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| Zebrafish_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for zebrafish and human orthologous genes computed using ontologies R and H. For format see below. | ||
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| Zebrafish_Mouse_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and zebrafish orthologous genes computed using ontologies R and H. For format see below. | ||
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| Nonorthologs_Mouse_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and human non-orthologous genes computed using ontologies R and H. For format see below. | ||
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| Nonorthologs_Zebrafish_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for zebrafish and human non-orthologous genes computed using ontologies R and H. For format see below. | ||
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| Nonorthologs_Zebrafish_Mouse_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and zebrafish non-orthologous genes computed using ontologies R and H. For format see below. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'Gene1': Identifier of first gene in gene pair being compared | ||
| 'Gene2': Identifier of second gene in gene pair being compared | ||
| 'All Pairs MedianIC With Homology': AP IC of gene pair computed using ontology H | ||
| 'All Pairs MedianIC Without Homology': AP IC of gene pair computed using ontology R | ||
| 'All Pairs MedianSimJ With Homology': AP SimJ of gene pair computed using ontology H | ||
| 'All Pairs MedianSimJ Without Homology': AP SimJ of gene pair computed using ontology R | ||
| 'Best Pairs MedianIC With Homology': BP IC of gene pair computed using ontology H | ||
| 'Best Pairs MedianIC Without Homology': BP IC of gene pair computed using ontology R | ||
| 'Best Pairs MedianSimJ With Homology': BP SimJ of gene pair computed using ontology H | ||
| 'Best Pairs MedianSimJ Without Homology': BP IC of gene pair computed using ontology R | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| Mouse_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and human orthologous genes computed using ontologies R and H'. For format see below. | ||
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| Zebrafish_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for zebrafish and human orthologous genes computed using ontologies R and H'. For format see below. | ||
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| Zebrafish_Mouse_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and zebrafish orthologous genes computed using ontologies R and H'. For format see below. | ||
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| Nonorthologs_Mouse_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and human non-orthologous genes computed using ontologies R and H'. For format see below. | ||
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| Nonorthologs_Zebrafish_Human_SimilarityScores.tsv | ||
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| This file contains similarity scores for zebrafish and human non-orthologous genes computed using ontologies R and H'. For format see below. | ||
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| Nonorthologs_Zebrafish_Mouse_SimilarityScores.tsv | ||
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| This file contains similarity scores for mouse and zebrafish non-orthologous genes computed using ontologies R and H'. For format see below. | ||
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| Format: tab separated file (.tsv) | ||
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| Columns: | ||
| 'Gene1': Identifier of first gene in gene pair being compared | ||
| 'Gene2': Identifier of second gene in gene pair being compared | ||
| 'All Pairs MedianIC With Homology': AP IC of gene pair computed using ontology H' | ||
| 'All Pairs MedianIC Without Homology': AP IC of gene pair computed using ontology R | ||
| 'All Pairs MedianSimJ With Homology': AP SimJ of gene pair computed using ontology H' | ||
| 'All Pairs MedianSimJ Without Homology': AP SimJ of gene pair computed using ontology R | ||
| 'Best Pairs MedianIC With Homology': BP IC of gene pair computed using ontology H' | ||
| 'Best Pairs MedianIC Without Homology': BP IC of gene pair computed using ontology R | ||
| 'Best Pairs MedianSimJ With Homology': BP SimJ of gene pair computed using ontology H' | ||
| 'Best Pairs MedianSimJ Without Homology': BP IC of gene pair computed using ontology R | ||
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