Reintroduce initialize function in the micro simulation API #515
Workflow file for this run
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| name: Test adaptivity functionality | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| pull_request: | |
| branches: | |
| - "*" | |
| jobs: | |
| adaptivity_integration_tests: | |
| name: Run adaptivity integration tests | |
| runs-on: ubuntu-latest | |
| container: precice/precice:develop | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| path: micro-manager | |
| - name: Install dependencies | |
| working-directory: micro-manager | |
| run: | | |
| apt-get -qq update | |
| apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel | |
| - name: Install Micro Manager | |
| working-directory: micro-manager | |
| run: pip3 install --user . | |
| - name: Run integration test with local adaptivity | |
| timeout-minutes: 3 | |
| working-directory: micro-manager/tests/integration/test_unit_cube | |
| run: | | |
| export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH | |
| python3 unit_cube.py & python3 run_micro_manager.py --config micro-manager-config-local-adaptivity.json | |
| - name: Run integration test with global adaptivity | |
| timeout-minutes: 3 | |
| working-directory: micro-manager/tests/integration/test_unit_cube | |
| run: | | |
| export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH | |
| python3 unit_cube.py & python3 run_micro_manager.py --config micro-manager-config-global-adaptivity.json | |
| adaptivity_unit_tests_serial: | |
| name: Run adaptivity unit tests in serial | |
| runs-on: ubuntu-latest | |
| container: precice/precice:develop | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| path: micro-manager | |
| - name: Install Dependencies | |
| working-directory: micro-manager | |
| run: | | |
| apt-get -qq update | |
| apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel | |
| - name: Install Micro Manager | |
| working-directory: micro-manager | |
| run: pip3 install --user . | |
| - name: Run unit tests | |
| working-directory: micro-manager/tests/unit | |
| run: python3 -m unittest test_adaptivity_serial.py | |
| adaptivity_unit_tests_parallel: | |
| name: Run adaptivity unit tests in parallel | |
| runs-on: ubuntu-latest | |
| container: precice/precice:develop | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| path: micro-manager | |
| - name: Install sudo for MPI | |
| working-directory: micro-manager | |
| run: | | |
| apt-get -qq update | |
| apt-get -qq install sudo | |
| - name: Use mpi4py | |
| uses: mpi4py/setup-mpi@v1 | |
| - name: Install Dependencies | |
| working-directory: micro-manager | |
| run: | | |
| apt-get -qq update | |
| apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel twine | |
| - name: Install Micro Manager | |
| working-directory: micro-manager | |
| run: pip3 install --user . | |
| - name: Run unit tests | |
| working-directory: micro-manager/tests/unit | |
| run: mpiexec -n 2 --allow-run-as-root python3 -m unittest test_adaptivity_parallel.py |