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Bump the python-packages group with 2 updates #196

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@dependabot dependabot bot commented on behalf of github Feb 12, 2024

Bumps the python-packages group with 2 updates: scikit-image and numpy.

Updates scikit-image from 0.19.3 to 0.22.0

Release notes

Sourced from scikit-image's releases.

v0.22.0

No release notes provided.

v0.22.0rc1

scikit-image 0.22.0rc1

We're happy to announce the release of scikit-image 0.22.0rc1!

New Features

  • Add new image sequence skimage.data.palisades_of_vogt showing in-vivo tissue of the palisades of Vogt (#6858).

Performance

  • Add lazy loading to the skimage.feature module (#6983).
  • Add lazy loading to the skimage.graph submodule (#6985).
  • Add lazy loading to the skimage.measure submodule (#6999).
  • Add lazy loading to the skimage.transform submodule (#7009).
  • Add lazy loading to the skimage.restoration submodule (#7021).
  • Add lazy loading to the skimage.registration submodule (#7032).
  • Avoid unnecessary padding in skimage.measure.block_resize (#7092).

Bug Fixes

  • Add num_pixels and coords_scaled to regionprops_table (#7039).
  • Update video.rst (#7076).
  • For uniform intensity images, return intensity value as threshold (#7098).
  • Fix color conversion error (#7116).
  • Make phase_cross_correlation return ndarray when disambiguate=True (#7112).
  • Allow extra_properties of non equal lengths to be passed correctly to regionprops_table (#7136).

API Changes

  • Make PyWavelets an optional dependency which is only required for skimage.restoration.denoise_wavelet and skimage.restoration.estimate_sigma (#7156).
  • Remove deprecated skimage.filters.inverse. Use skimage.filters.filter_inverse instead (#7161).
  • Remove deprecated function skimage.filters.ridges.compute_hessian_eigenvalues. Use skimage.feature.hessian_matrix_eigvals on the results of skimage.feature.hessian_matrix instead (#7162).
  • Remove deprecated automatic detection of the color channel in skimage.filters.gaussian. channel_axis=None now indicates a grayscale image. Set the color channel with channel_axis=-1 explicitly (#7164).
  • Change number of returned arguments in skimage.registration.phase_cross_correlation. The function now always returns the 3 arguments shift, error, and phasediff (#7166).
  • Deprecate return_error in skimage.registration.phase_cross_correlation (#7174).

Maintenance

  • Don't test numpy prerelease on azure (#6996).
  • Drop Python 3.8 support per SPEC 0 (#6990).
  • Upper pin imageio (#7002).
  • Update core dependencies per SPEC0 (#7005).
  • meson: allow proper selection of NumPy, Pythran in cross builds (#7003).
  • Unpin imageio and add warningfilter (#7006).
  • Update to latest attach-next-milestone action (#7014).
  • Avoid deprecated auto-removal of overlapping axes in thresholding example (#7026).

... (truncated)

Commits

Updates numpy from 1.26.2 to 1.26.4

Release notes

Sourced from numpy's releases.

v1.26.4

NumPy 1.26.4 Release Notes

NumPy 1.26.4 is a maintenance release that fixes bugs and regressions discovered after the 1.26.3 release. The Python versions supported by this release are 3.9-3.12. This is the last planned release in the 1.26.x series.

Contributors

A total of 13 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Elliott Sales de Andrade
  • Lucas Colley +
  • Mark Ryan +
  • Matti Picus
  • Nathan Goldbaum
  • Ola x Nilsson +
  • Pieter Eendebak
  • Ralf Gommers
  • Sayed Adel
  • Sebastian Berg
  • Stefan van der Walt
  • Stefano Rivera

Pull requests merged

A total of 19 pull requests were merged for this release.

  • #25323: BUG: Restore missing asstr import
  • #25523: MAINT: prepare 1.26.x for further development
  • #25539: BUG: numpy.array_api: fix linalg.cholesky upper decomp...
  • #25584: CI: Bump azure pipeline timeout to 120 minutes
  • #25585: MAINT, BLD: Fix unused inline functions warnings on clang
  • #25599: BLD: include fix for MinGW platform detection
  • #25618: TST: Fix test_numeric on riscv64
  • #25619: BLD: fix building for windows ARM64
  • #25620: MAINT: add newaxis to __all__ in numpy.array_api
  • #25630: BUG: Use large file fallocate on 32 bit linux platforms
  • #25643: TST: Fix test_warning_calls on Python 3.12
  • #25645: TST: Bump pytz to 2023.3.post1
  • #25658: BUG: Fix AVX512 build flags on Intel Classic Compiler
  • #25670: BLD: fix potential issue with escape sequences in __config__.py
  • #25718: CI: pin cygwin python to 3.9.16-1 and fix typing tests [skip...
  • #25720: MAINT: Bump cibuildwheel to v2.16.4
  • #25748: BLD: unvendor meson-python on 1.26.x and upgrade to meson-python...
  • #25755: MAINT: Include header defining backtrace
  • #25756: BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)

... (truncated)

Commits
  • 9815c16 Merge pull request #25770 from charris/prepare-1.26.4
  • 114ed25 REL: Prepare for the NumPy 1.26.4 release
  • 2fae4d3 Merge pull request #25323 from stefanor/import-asstr
  • ce89a0a Merge pull request #25756 from charris/backport-24711
  • f62dfc6 Merge pull request #25755 from charris/backport-25709
  • fee88ab BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)
  • 659be68 MAINT: Include header defining backtrace
  • 837cd38 Merge pull request #25748 from rgommers/unvendor-mesonpython
  • f984240 CI: upgrade cibuildwheel from 2.16.4 to 2.16.5 [wheel build]
  • 3548f9d BLD: unvendor meson-python [wheel build]
  • Additional commits viewable in compare view

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@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Feb 12, 2024
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dependabot bot commented on behalf of github Feb 19, 2024

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

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dependabot bot commented on behalf of github Mar 4, 2024

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

Bumps the python-packages group with 2 updates: [scikit-image](https://github.com/scikit-image/scikit-image) and [numpy](https://github.com/numpy/numpy).


Updates `scikit-image` from 0.19.3 to 0.22.0
- [Release notes](https://github.com/scikit-image/scikit-image/releases)
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt)
- [Commits](scikit-image/scikit-image@v0.19.3...v0.22.0)

Updates `numpy` from 1.26.2 to 1.26.4
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v1.26.2...v1.26.4)

---
updated-dependencies:
- dependency-name: scikit-image
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/python-packages-47ff7ce13b branch from b5cb4ac to 37d855d Compare March 11, 2024 14:05
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dependabot bot commented on behalf of github Apr 1, 2024

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

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dependabot bot commented on behalf of github Apr 8, 2024

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

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dependabot bot commented on behalf of github Apr 15, 2024

Superseded by #216.

@dependabot dependabot bot closed this Apr 15, 2024
@dependabot dependabot bot deleted the dependabot/pip/python-packages-47ff7ce13b branch April 15, 2024 14:19
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