add missing header #931
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| macos12: | |
| name: "macOS 12" | |
| runs-on: macos-12 | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| env: | |
| SKBUILD_CMAKE_ARGS: "-DEXTRA_WARNINGS=ON" | |
| SKBUILD_CMAKE_TARGETS: "all;check" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build wheel and install | |
| run: | | |
| python3 -m pip install wheel | |
| python3 -m pip wheel -v . | |
| python3 -m pip install gemmi-*.whl | |
| - name: Python Tests | |
| run: | | |
| python3 -m unittest discover -v -s tests/ | |
| python3 -m pip install sphinx | |
| cd docs | |
| sphinx-build -M doctest . _build -n -E | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: gemmi-macos12 | |
| path: | | |
| ${{runner.workspace}}/gemmi-*.whl | |
| retention-days: 14 | |
| macos11: | |
| name: "macOS 11 (w/o python)" | |
| runs-on: macos-11 | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: mkdir build | |
| run: cmake -E make_directory ${{runner.workspace}}/build | |
| - name: CMake Build | |
| working-directory: ${{runner.workspace}}/build | |
| shell: bash | |
| run: | | |
| cmake --version | |
| cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=MinSizeRel -DBUILD_SHARED_LIBS=ON | |
| cmake --build . -j3 | |
| cmake --build . --target check -j3 | |
| - name: Install | |
| working-directory: ${{runner.workspace}}/build | |
| shell: bash | |
| run: sudo cmake --install . | |
| - name: Test | |
| run: | | |
| ctest --output-on-failure | |
| python3 tests/test_prog.py | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: gemmi-macos11 | |
| path: | | |
| ${{runner.workspace}}/build/gemmi | |
| ${{runner.workspace}}/build/libgemmi* | |
| retention-days: 14 | |
| windows2022: | |
| name: "Windows 2022" | |
| runs-on: windows-2022 | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: build and test | |
| run: | | |
| python -m pip install -v . | |
| python -m pip install numpy | |
| python -m unittest discover -v -s tests/ | |
| - name: run doctest | |
| working-directory: ./docs | |
| run: | | |
| python -m pip install sphinx | |
| sphinx-build -M doctest . _build -n -E | |
| ubuntu2204: | |
| name: "Ubuntu 22.04" | |
| runs-on: ubuntu-22.04 | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: apt-get | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libz-dev python3-pip g++ gfortran python3-numpy | |
| - name: install pybind11 | |
| run: | | |
| git clone --depth=1 https://github.com/pybind/pybind11.git | |
| #cd pybind11 | |
| #cmake . -Wno-dev -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPYBIND11_TEST=OFF | |
| #make | |
| #sudo make install | |
| - name: build and test | |
| run: | | |
| g++ --version | |
| cmake --version | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_BUILD_TYPE=MinSizeRel -DUSE_FORTRAN=1 -DEXTRA_WARNINGS=1 -DUSE_PYTHON=1 -DPython_EXECUTABLE=/usr/bin/python3 -DBUILD_SHARED_LIBS=ON -DCMAKE_CXX_VISIBILITY_PRESET=hidden | |
| make -j2 | |
| make -j2 check | |
| sudo make install | |
| python3 -m unittest discover -v -s ../tests/ | |
| strip --strip-unneeded ./gemmi ./gemmi.cpython*.so | |
| - name: run doctest | |
| run: | | |
| sudo python3 -m pip install -U sphinx | |
| export PYTHONPATH=$PWD/build | |
| cd docs | |
| sphinx-build -M doctest . _build -n -E | |
| ubuntu2004: | |
| name: "Ubuntu 20.04" | |
| runs-on: ubuntu-20.04 | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: apt-get | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libz-dev python3-pip g++ gfortran python3-numpy valgrind | |
| - name: install pybind11 | |
| run: | | |
| python3 -m pip install pybind11 | |
| - name: build and test | |
| run: | | |
| g++ --version | |
| cmake --version | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_BUILD_TYPE=Debug -DUSE_PYTHON=1 -DPython_EXECUTABLE=python3 | |
| cmake --build . --config Debug -j2 | |
| cmake --build . --config Debug --target check -j2 | |
| sudo cmake --install . --config Debug | |
| cd .. | |
| python3 -m unittest discover -v -s tests/ | |
| - name: run doctest | |
| run: | | |
| sudo pip3 install -U sphinx | |
| cd docs | |
| sphinx-build -M doctest . _build -n -E | |
| - name: run tests under valgrind | |
| run: PYTHONMALLOC=malloc valgrind python3 -m unittest discover -v -s tests/ | |
| ubuntu2004_clang6: | |
| name: "Ubuntu 20.04 with Clang 6.0" | |
| runs-on: ubuntu-20.04 | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| env: | |
| CC: clang-6.0 | |
| CXX: clang++-6.0 | |
| SKBUILD_CMAKE_ARGS: "-DCMAKE_CXX_STANDARD=11;-DEXTRA_WARNINGS=ON" | |
| SKBUILD_CMAKE_TARGETS: "all;check" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - run: sudo apt-get install clang-6.0 libz-dev python3-pip python3-numpy | |
| - name: install pybind11 | |
| run: | | |
| sudo /usr/bin/python3 -m pip install "pybind11[global]" build | |
| - name: build and test | |
| run: | | |
| $CXX --version | |
| python3 -m build --sdist | |
| python3 -m pip install -v dist/gemmi-*.tar.gz | |
| python3 -m unittest discover -v -s tests/ | |
| - name: run doctest | |
| run: | | |
| python3 -m pip install -U sphinx | |
| cd docs | |
| sphinx-build -M doctest . _build -n -E | |
| centos: | |
| runs-on: ubuntu-latest | |
| name: "CentOS 7" | |
| container: centos:7 | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: yum | |
| run: | | |
| yum update -y && yum install -y epel-release | |
| yum install -y gcc-c++ cmake3 make git python3-devel | |
| pip3 install -U numpy | |
| g++ --version | |
| python3 --version | |
| cmake3 --version | |
| type python3 | |
| - name: install pybind11 | |
| run: | | |
| git clone --branch stable --depth=1 https://github.com/pybind/pybind11.git | |
| cd pybind11 | |
| cmake3 . -Wno-dev -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPYBIND11_TEST=OFF | |
| make | |
| make install | |
| - name: build and test | |
| run: | | |
| pwd | |
| cmake3 . -DUSE_PYTHON=1 -DPython_EXECUTABLE=/usr/bin/python3 | |
| make -j2 | |
| make -j2 check | |
| make install | |
| python3 -m unittest discover -v -s ./tests/ | |
| strip --strip-unneeded ./gemmi ./gemmi.cpython*.so | |
| - name: run doctest | |
| run: | | |
| pip3 install -U sphinx | |
| cd docs | |
| PYTHONPATH=.. sphinx-build -M doctest . _build -n -E | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: gemmi-linux | |
| path: | | |
| ./gemmi | |
| ./gemmi.cpython*.so | |
| retention-days: 14 |